Ecen011995.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000811.1:437675-441249[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0053 0.42 12.0 0.1 1 23 75 98 75 98 0.88 2 18 0.32 25 6.4 0.2 2 23 129 151 128 151 0.92 3 18 0.00067 0.053 14.8 1.4 1 23 173 195 173 195 0.99 4 18 0.088 6.9 8.1 0.7 1 23 199 221 199 221 0.90 5 18 0.00051 0.04 15.1 0.3 1 23 226 249 226 249 0.89 6 18 0.00052 0.041 15.1 1.9 1 23 255 278 255 278 0.96 7 18 0.00094 0.074 14.3 3.2 1 23 285 308 285 308 0.97 8 18 5.5e-05 0.0043 18.2 0.2 3 23 316 336 315 336 0.99 9 18 3.2e-07 2.5e-05 25.2 1.2 1 23 342 364 342 364 0.99 10 18 0.06 4.7 8.6 1.6 1 12 370 381 370 383 0.90 11 18 0.058 4.6 8.7 0.3 1 23 501 523 501 523 0.97 12 18 1.2 93 4.6 0.1 1 23 595 617 595 617 0.90 13 18 0.00067 0.052 14.8 0.2 1 23 621 643 621 643 0.98 14 18 0.019 1.5 10.2 1.3 1 23 648 671 648 671 0.95 15 18 0.0076 0.6 11.5 0.4 2 23 678 700 678 700 0.93 16 18 0.0042 0.33 12.3 6.5 1 23 707 730 707 730 0.97 17 18 0.00018 0.014 16.6 2.4 2 23 737 758 736 758 0.96 18 18 3.4e-05 0.0027 18.9 0.6 1 23 764 786 764 786 0.99
Sequence Information
- Coding Sequence
- ATGAACAACTCAATATATTTAAAGGCCAGACACTACAcaagaagtGTTGATGAGCACACTCCACACGAGACTAAAGAAGACAAACTCACTCAAAATAATACTGAAACGAAAACACTGACTGTAGTCAATAAAACAGACCCTGAGGAGCAAGCCAGGAAGGACAGCGTCTTGACGCTTCTAGAATGTTCTAGAATATGTCCTTTCAAATGGGCGAAAAACTTGTACTTCTGTATTTACTGCGAAGAATCCTTCGCTGACCCCGCAAAGCTGCGTAAGCACATATTCGCAGAACATGACAATATTCAACCAGACGAGATAAAACAAAGATTGATACTAATCGGAAGAAAACGGCACGAGTTCCTCAAAACAGACATCACAGATCTTAGCTGTAAACTCTGCGACGATCCTATTAGCTCACTAGACCATCTCAAAGTACATCTcattgaaaatcacaataagaACATCGACCGAAAATCCCATCTTGGGATACTCCCGTTCAGAATTAACGTCGACGATTACAAATGCGTCATTTGTGATGAAAAATACGGGGAATACAAGACTTTAAACCATCACATGAATGTTCATTTTCAGAACTTCATTTGTGAACAATGCGGATCTGGTTTCATAACTCCCGCTCGGTTACGGGTCCACTGCTTCACCCACGAAACGGGTTCCTTTCCCTGCAGCGATTGTAACAAAGTCTTTCGCTCCAGCAACGCAAATAAAGAACATTACGCTGACGTTCATTTGAAAGTGAAAAGACATAGATGCCCTCAATGCCCTGAGACTTTCAGAAACTACTTTCAGAGAACTAAGCACATATCTATTGCTCACGGGGTCAAATTAAAAGAGTTCAAGTGTGAATACTGTCCTAAAGTCTTTCACTACAGTGGGAAAATGACTGGTCACATTCGACACGCGCATCTAAAAGAAAAACGGCATGGTTGTGATTTGTGCGACTGGAAATTTTACTCCGCGTATGAACTGAAGCAGCACATGATAAAACACGGTGGAGAGAGGAAGTATCAGTGCAATGTCTGCAAGAAAGCGTATGCGAGAAAGTACACCCTCCGAGAGCATATGAGGATACATGAGAATGACAGACGATTTGTTTGCACGGTTTGCGGGAAGTCATTTGTGCAGGCGTGTAGAAACCAAATAGCTGTCGCGACGAAGCGAACGAGAATAGTGCCACTCTTCCAAGTGGCTTACGATCGCAGCCTCTGCAAACCTCTCGGAACTATCTCAGACTTCAGTAAACTGCAAAGAACACAGAATATTTCACTCTCTGACACTATCACGTACGAAAACTCTCGAAGCCCATCGCCAGTTTGCCCGAGAACGCCATCACCATACGCTCCCGAACAATCAGATATCCATCCACCTGCAAAATATCTACTTAAAGAACAACCTGCGAAAAAGATCTCCGATTGCAGGCAGAATGCTCTTATAGTCTTCGAACACTCCACCGCTTACCCTTTCATATTCTCAAACAACAGTTACAGATGCTTTGTCTGCTCCCAATCGTATTTAGACGTTCCAAACCTTAAAATCCACATGTCAGAACACCCTTTCGCTCATATTAAACGACTAATGAACAACAGAAAGGAAAATGTTCTTAAAGTTGACGTCAGCGAACTGACTTGTAAACTCTGCATGCTGCCTATGAGAGATTTGGTCCTATTGAAGCATCATCTCAAAAACGAGCACGATAAACCGGTAGATACGGAGCTGCAAGACAACCTTGTGCCTTACGATCTGACCGTACACGGTCCTGAGGGATACCAGTGCGTTGTCTGCGAGCAAAACTTCATCAAAGTCCGTATTCTCGTCATACATATGAGCGATCACTTCAGCAACTACAGCTGCGAAGTCTGCGGATCAGGTTTTATGACACTACGGCTGCTAAAGAAGCATCTAGAAGTCCACGAGACGGGAAACTTCCCTTGCGATCGTTGCAGCAAAATATTCAGCACTACGCACAAAAGGGCCTTGCATATCCGCGGGGTTCATATGAAGCTGTACCCGCGGCGCTGTCCTATGTGCCCGGAACGTTTCAATTCAAACTACAAACGGACAATACACCTCCAAGACGTCCATAACCAATCCACTAGAGTGCATAAATGTAAGACTTGTGGACGTGGTTTCCATCTCAAGTATCATTTGTTAAGCCATGTACGTTCCGTGCATTTGCAAGAGCGGAATCAACAGTGCGATGTGTGTCTACAACGGTTTTGTAATAAAGAATCTTTGAAACGACATATGGTGGTGCATACAGGAGAAAAGAATTATAAATGTGAAGTTTGTGGTATGGCGTTTTTGAGACGGAAGAATTTGAAGGACCATTTACGGTTGCATGAGGTTCATTGA
- Protein Sequence
- MNNSIYLKARHYTRSVDEHTPHETKEDKLTQNNTETKTLTVVNKTDPEEQARKDSVLTLLECSRICPFKWAKNLYFCIYCEESFADPAKLRKHIFAEHDNIQPDEIKQRLILIGRKRHEFLKTDITDLSCKLCDDPISSLDHLKVHLIENHNKNIDRKSHLGILPFRINVDDYKCVICDEKYGEYKTLNHHMNVHFQNFICEQCGSGFITPARLRVHCFTHETGSFPCSDCNKVFRSSNANKEHYADVHLKVKRHRCPQCPETFRNYFQRTKHISIAHGVKLKEFKCEYCPKVFHYSGKMTGHIRHAHLKEKRHGCDLCDWKFYSAYELKQHMIKHGGERKYQCNVCKKAYARKYTLREHMRIHENDRRFVCTVCGKSFVQACRNQIAVATKRTRIVPLFQVAYDRSLCKPLGTISDFSKLQRTQNISLSDTITYENSRSPSPVCPRTPSPYAPEQSDIHPPAKYLLKEQPAKKISDCRQNALIVFEHSTAYPFIFSNNSYRCFVCSQSYLDVPNLKIHMSEHPFAHIKRLMNNRKENVLKVDVSELTCKLCMLPMRDLVLLKHHLKNEHDKPVDTELQDNLVPYDLTVHGPEGYQCVVCEQNFIKVRILVIHMSDHFSNYSCEVCGSGFMTLRLLKKHLEVHETGNFPCDRCSKIFSTTHKRALHIRGVHMKLYPRRCPMCPERFNSNYKRTIHLQDVHNQSTRVHKCKTCGRGFHLKYHLLSHVRSVHLQERNQQCDVCLQRFCNKESLKRHMVVHTGEKNYKCEVCGMAFLRRKNLKDHLRLHEVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702219;
- 90% Identity
- iTF_00703246;
- 80% Identity
- -