Edod019438.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000133.1:556780-560297[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00051 12 6.5 0.1 23 44 197 218 191 223 0.90 2 11 0.097 2.2e+03 -0.8 0.0 26 46 228 248 223 252 0.86 3 11 0.013 2.9e+02 2.0 0.1 21 52 250 281 245 283 0.89 4 11 1.9e-08 0.00042 20.7 0.0 19 52 304 337 292 338 0.85 5 11 0.0021 48 4.5 0.1 21 46 334 359 332 366 0.80 6 11 0.064 1.4e+03 -0.2 0.0 21 43 362 384 359 390 0.81 7 11 3.8e-05 0.86 10.1 0.1 18 35 387 404 384 416 0.79 8 11 0.1 2.3e+03 -0.9 0.4 26 43 423 440 418 455 0.72 9 11 0.088 2e+03 -0.7 0.0 21 47 474 500 470 507 0.77 10 11 0.004 91 3.6 0.0 21 51 502 532 498 533 0.87 11 11 0.00026 5.8 7.5 0.0 21 46 530 555 528 558 0.91
Sequence Information
- Coding Sequence
- ATGCCTTCCTCAGTCTGTAGAATTTGTTTGAGTAGTGATTTGAAAATGTACTACATCGAAAACAAATATTCACAAGAAGTCTATCAGAGGTTTACTGGAACTTTACTCGTCTCAGGAGACAACAGACCCAGCACAGTGTGCTACATGTGCGATGCACAGTTAGTAAGATGCTGGAGGTTCTTCGACATGTGCCAGAAATCAGAGAAAATCTGCACAGACCTGTATCAAACCAACATAGAGGTGACACAGGAGAGCTTAACTCAGCACAACCTGAAATGGATTTACAACTTGTCCACAGCACCAGTAAAAATAGTGACCAACATAAAAGAGATTGAAATCACTGTTAAAGAAGAAATTATTGCGAAAGAAGAAGACACTTCTGATGATGAATACCTGATGCCCATGTGCTCTGAACAAATTAAAAGTGATGACAAATGCAATGTATCTCCAATTACGGAAAGTAATGAGAATAACACTGCATCTACACGCATTAATGGAAATTGTACGAAtgaggatattaaaaatgtaaaaagtgataaaattaaaataaaaccagaaATTGTACTTAAAAGAGAAATACGATTGCGAAACCCATATTCATGTCCCATATGTAACAGTGCTTTCGATAAAAAGACTTTATTACGCAAGCACATGGCAACCCATGCTGACAACACATCTCATGTTTGCAAAGTTTGTAACAAAGCATTTGTCTATAGTGTTAGTCTAAGGATGCACATGAAAATTCACACAGAGAAGCAATATACTTGCAATGTTTGTGGCAAATCCTACTGTAAAAAGCAAGGCTTGAAGAATCACATGAATACACACACCGGAGCAAAGCCATATACATGTAATGTGTGCGAAAATTCATTCTCTAGTCCTTCaactttaataaaacataagacaATACACACGGGTGAGAGACCACACTCATGTGACGTGTGCTATAAAAAATTCAGGCAAAGTGGTGATTTGAGTAGACACATGAAATTGCATACTGGAGAGAAGCCATTTACCTGCAACATTTGCAACAAGTCATATATGAagagatatttattaaaaaatcatttgaaTACTCACACCGGGGAAAAGCCCTATAATTGCGAAGTTTGTGATAAGTCGTTCAGGAATGGCACCACTTTGGCATTACATACTGTACGTCATGCTGGTGAAAAGCCTTACACATGTCCTATATGTAAAAGTGTCTTTGATCTGAAGCCTCTTTTACTCAAACATATTGCGACCCACACCGACAACTCATCATATGTGTGCAAGATTTGTAGCAAAGTTTATGTTCATAGTATTCTTTTGAAGCAACATGAGAGAATCCACATGGATACGAGACGGTTTACTTGCAATGTGTGTGGCAAAACGTTCTGCAGGAGTATGGGTCTAATCAGCCACATGACAACACACACCGGAGAAAAGCCCTATAAGTGTGATGTATGTGAAAAGACATTTACTCGTAAAGAGACTTTAGAAGGACACATGAGGATACACACGGGGGAGAAACCATACTCATGTGATGTATGCAATAAGAAATTTACTTTCCACCATGGTCTGAACCGACATCTTAAAATACACACTGGAGAAAAACCCTTTAGTTGCAGCATCTGCAACATGTCATTTATAGGAGGTTATAAATTGAGAAGACATTTGAAAGTTCACAGCAAAGAAAGCCTTAGTTGCCTGTAA
- Protein Sequence
- MPSSVCRICLSSDLKMYYIENKYSQEVYQRFTGTLLVSGDNRPSTVCYMCDAQLVRCWRFFDMCQKSEKICTDLYQTNIEVTQESLTQHNLKWIYNLSTAPVKIVTNIKEIEITVKEEIIAKEEDTSDDEYLMPMCSEQIKSDDKCNVSPITESNENNTASTRINGNCTNEDIKNVKSDKIKIKPEIVLKREIRLRNPYSCPICNSAFDKKTLLRKHMATHADNTSHVCKVCNKAFVYSVSLRMHMKIHTEKQYTCNVCGKSYCKKQGLKNHMNTHTGAKPYTCNVCENSFSSPSTLIKHKTIHTGERPHSCDVCYKKFRQSGDLSRHMKLHTGEKPFTCNICNKSYMKRYLLKNHLNTHTGEKPYNCEVCDKSFRNGTTLALHTVRHAGEKPYTCPICKSVFDLKPLLLKHIATHTDNSSYVCKICSKVYVHSILLKQHERIHMDTRRFTCNVCGKTFCRSMGLISHMTTHTGEKPYKCDVCEKTFTRKETLEGHMRIHTGEKPYSCDVCNKKFTFHHGLNRHLKIHTGEKPFSCSICNMSFIGGYKLRRHLKVHSKESLSCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698506; iTF_00696980; iTF_00696651; iTF_00702202; iTF_00702553; iTF_00700317; iTF_00700661;
- 90% Identity
- iTF_00696980;
- 80% Identity
- iTF_00698506;