Eabb003677.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000021.1:1866740-1869278[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0015 10 6.5 0.1 23 44 197 218 192 230 0.90 2 11 0.3 2.1e+03 -0.9 0.0 26 46 228 248 223 253 0.85 3 11 0.059 4.2e+02 1.4 0.0 22 52 252 282 249 284 0.88 4 11 5.6e-08 0.00039 20.7 0.0 19 52 305 338 293 339 0.85 5 11 0.0063 45 4.5 0.1 21 46 335 360 333 367 0.80 6 11 0.19 1.3e+03 -0.2 0.0 21 43 363 385 360 391 0.81 7 11 0.00011 0.8 10.1 0.1 18 35 388 405 385 417 0.79 8 11 0.29 2e+03 -0.8 0.3 26 43 424 441 419 454 0.73 9 11 0.23 1.6e+03 -0.5 0.0 21 47 475 501 468 507 0.78 10 11 0.012 84 3.6 0.0 21 51 503 533 499 534 0.87 11 11 0.00081 5.7 7.4 0.0 21 46 531 556 529 558 0.91
Sequence Information
- Coding Sequence
- ATGCCTTCCTCAGTGTGTAGAATTTGTTTGAGTAGTGATTTGAAAATGTACTACATCGAAAACAAATATTCACAAGAAGTCTATCAGAGGTTTACTGGAACTTTGCTTGTCTCAGGAGACAACAGACCCAGCACAGTGTGCTACATGTGCGATGCACAGTTAGTAAGATGCTGGAGGTTCTTCGACATGTGCCAGAAATCAGAGAAAATCTGCACAGACCTGTATCAAACCGACATAGAGGTGACACAGGAGAGCTTAACTCAGCACAACCTGAAATGGATTTACAACTTGTCCACAGCACCAGTAAAAATAGTGACCCACATAAAAGAGATTGAAATCACTGTTAAAGAAGAAATTACTGCGAAAGAAGAAGACACTTCTGATGATGAATACCTGATGCCTGTGAGCTCTGAACAAATTAAAAGTGATGACAAATGCAATGTATCTCCAATTACGGAAATTAATGAGAATAACACTGCATCTACACCCATTAATGGAAATTGTACGAATGAGGATATTAAAAATGATATAAGTGATAAAATTAAAATAAAACCAGAAATTGTACTTAAAAGAGAAATACGATTGCGAAACccatattcatgtcccatatgtaacagtgctttcgataaaaagactttattacgcaagcacatggcaacccatgctgacaacacatctcatgtttgcaaagtttgtaacaaagcatttatctatagtgttagtctaaggatgcacatgaaaattcacacagaggagaagcaatatacttgcaatgtttgtggcaaatcctactgtaaaaagcaaggcttgaagaatcacatgaatacacacaccggagcaaagccatatacttgtaatgtgtgcgaaaattcattctctagtccttcaactttaataaaacacaagacaatacacacgggtgagagaccacactcctgtgacgtgtgctataaaaaattcaggcaaagtggtgatttgagtagacacatgaaattgcatactggagagaagccatttacctgcaacatttgcaacaagtcatatatgaagagatatttattaaaaaatcatttgaatactcacaccggggaaaagccctataattgcgaagtttgtgacaagtcgttcaggaatggcaccactttggcattacatactgtacgtcatgctggtgaaaagccttacacatgtcctatatgtaaaagtgtctttgatctgaagcctcttttactcaaacatattgcgacacacactgacaactcatcatatgtgtgcaagatttgtagcaaagtttatgttcatagtattcttttgaagcaacatgagagaatccacatggatacgagacggtttacttgcaatgtgtgtggcaaaacgttctgcaggagtatgggtctaatcagccacatgacaacacacaccggagaaaagccctataagtgtaatgtatgtgaaaagacatttactcgtaaagagactttagaaggacacatgaggatacacacgggggagaaaccatactcatgtgatgtatgcaataagaaatttactttccaccatggtctgaaccgacatcttaaaatacacactggagaaaaaccatttagttgcagcatctgcaacatgtcatttataggaggttataaattgagaagacatttgaaagttcacagcaaataa
- Protein Sequence
- MPSSVCRICLSSDLKMYYIENKYSQEVYQRFTGTLLVSGDNRPSTVCYMCDAQLVRCWRFFDMCQKSEKICTDLYQTDIEVTQESLTQHNLKWIYNLSTAPVKIVTHIKEIEITVKEEITAKEEDTSDDEYLMPVSSEQIKSDDKCNVSPITEINENNTASTPINGNCTNEDIKNDISDKIKIKPEIVLKREIRLRNPYSCPICNSAFDKKTLLRKHMATHADNTSHVCKVCNKAFIYSVSLRMHMKIHTEEKQYTCNVCGKSYCKKQGLKNHMNTHTGAKPYTCNVCENSFSSPSTLIKHKTIHTGERPHSCDVCYKKFRQSGDLSRHMKLHTGEKPFTCNICNKSYMKRYLLKNHLNTHTGEKPYNCEVCDKSFRNGTTLALHTVRHAGEKPYTCPICKSVFDLKPLLLKHIATHTDNSSYVCKICSKVYVHSILLKQHERIHMDTRRFTCNVCGKTFCRSMGLISHMTTHTGEKPYKCNVCEKTFTRKETLEGHMRIHTGEKPYSCDVCNKKFTFHHGLNRHLKIHTGEKPFSCSICNMSFIGGYKLRRHLKVHSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698837;
- 90% Identity
- iTF_00696651; iTF_00698837; iTF_00698506;
- 80% Identity
- iTF_00696651;