Basic Information

Insect: Eupithecia pulchellata
Gene Symbol: -
Assembly: GCA_963931895.1
Location: OZ007536.1:12503467-12508617[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0068 37 5.1 0.0 25 44 200 219 195 225 0.89

2 12 0.047 2.6e+02 2.4 0.3 26 45 229 248 220 251 0.87

3 12 0.053 2.9e+02 2.3 0.1 22 52 253 283 248 285 0.87

4 12 3.1e-06 0.017 15.8 0.1 19 52 306 339 294 341 0.85

5 12 0.021 1.2e+02 3.5 0.1 21 44 336 359 334 363 0.75

6 12 0.0049 27 5.6 0.0 21 43 364 386 362 392 0.85

7 12 0.00014 0.77 10.5 0.1 18 39 389 410 386 421 0.78

8 12 0.24 1.3e+03 0.2 0.6 26 49 425 452 417 455 0.70

9 12 1.3 7.2e+03 -2.2 0.0 26 45 453 472 448 480 0.79

10 12 1.3 7.2e+03 -2.2 0.0 21 32 476 487 469 508 0.76

11 12 0.64 3.5e+03 -1.2 0.0 21 36 504 519 497 531 0.72

12 12 0.00047 2.6 8.9 0.0 21 51 532 562 515 563 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0068	37	5.1	0.0	25	44	200	219	195	225	0.89
2	12	0.047	2.6e+02	2.4	0.3	26	45	229	248	220	251	0.87
3	12	0.053	2.9e+02	2.3	0.1	22	52	253	283	248	285	0.87
4	12	3.1e-06	0.017	15.8	0.1	19	52	306	339	294	341	0.85
5	12	0.021	1.2e+02	3.5	0.1	21	44	336	359	334	363	0.75
6	12	0.0049	27	5.6	0.0	21	43	364	386	362	392	0.85
7	12	0.00014	0.77	10.5	0.1	18	39	389	410	386	421	0.78
8	12	0.24	1.3e+03	0.2	0.6	26	49	425	452	417	455	0.70
9	12	1.3	7.2e+03	-2.2	0.0	26	45	453	472	448	480	0.79
10	12	1.3	7.2e+03	-2.2	0.0	21	32	476	487	469	508	0.76
11	12	0.64	3.5e+03	-1.2	0.0	21	36	504	519	497	531	0.72
12	12	0.00047	2.6	8.9	0.0	21	51	532	562	515	563	0.89

Sequence Information

Coding Sequence: ATGCCCTCATCATGTAGAATTTGTTTATGTAGTGATTTGAAAATGTACTTCATAGAACACAAATATTCACAAGAAGTCTATCAGAGGTTTACTGGAACTTTGTTCATGCCCGGAGACAACCGGCCCAGCGCAGTGTGCTACCTGTGCGACGCACAGCTAGTGAGATGTTGGAGGTTCTTCGACATGTGCCAGAAGTCAGACAAAATCTGCACAGACCTGTATCAGAACAACTTAGAGgTGACACAGGAGAGTTTAACTCAGCACAACCTGGGGTGGAGATACAACTTGTCCACGGCATCAGTGAAGTTGGTGGCTGATGTCGAAGAGATTGAAATCACTATTAAAGAAGAAACTACCGCGAAAGAAGAAGACACTTCGGATGATGAATACCTTATGCCAGCGTTCGCTGATCAAATCAAAGGTGATGATAAACGCAATGTGCCtcaaattaatgaaattaaagaGTCTAACACTGCATGTAGGCGCATTAATGGAAATCGTAGTAAAAAGTATGAAAGAAGAATTAAAAGTGataaaacgaaattaaaaataaaagaagaaattgTACTCAATCGAGAAATACGATTACGAAAATCTTATACATGTCCTACATGTAACAGTACCTTCGATCAGAAGCCTCTTTTACGCAAGCACATGGCGACACACGCTGAGAAGAGCTCCCGAGCTTGCAAAGTGTGTAACAAAGTATTTATCTATAGTGTGTGTCTACGGAAGCACATGAAAAATCACACAGAGGAGAGACGATATACATGCAATGTATGCGGCAAATCCTACTGTATGAAGCAAGGCTTAAGGAACCACATGAACACACACACCGGGGCCAAGCCGTATACATGCAGTGTTTGCGGAAATTCATTCTCCAGTCCTTCCACTCTAATAAAGCACAAGACTATACACACCGGCGAGAGACCCTACTCCTGTGACGTGTGCTGTAAAAAATTCAGGCAAAGTGGTGATTTGAATAGGCACATGAAATTGCATACTGGAGAAAAGCCTTTCACCTGCAACATTTGCAACAAGTCATTTATCAAgagatatatattaaaaaaccacATGAATATACACACTGGGGAGAAGCCCTATACCTGTGGAGTTTGCGGCAAGTCTTTCAGGAATAGCAACACTCTGGCATTCCACACCGTGCGGCACGCTGGTGAGAAGCCTTATACATGTCCTATTTGTAAAAGTGTCTTTGATCTGAAGGCGCTTCTACTGAAACATATTGCGACGCACACCAATAACTCCTCATATGTGTGCAAAATCTGTAGCAAGGTATTTGTTCATAGTATTCTTTTGAAGCAACATGAACGGATTCACTTGGATACAAGACGGTTCACTTGCAATGTTTGTGGCAAAACGTTCTGCAGGAGTATGGGCCTTATCAACCACATGAAAACACATACTGGGGAAAAGCCCTTTAAGTGTAATGTTTGTGACAAGTCGTTTCCTCGCAAGGAGACGTTAGAGGCACACAAGAGAATACACACGGGAGAGAAGCCATACTCTTGTGACGTATGTAATAAGAAATTTACTTTCAACCACGGCCTGAACACGCATATTAAAATCCACACTGGAGAGAAGCCATTTAGTTGCAGCATCTGCAACATGTCATTTATTGGAGGTTATAAATTGAGAAGACATTTGAAAGTGCACAGCAAAGAAAAGCCTTAG
Protein Sequence: MPSSCRICLCSDLKMYFIEHKYSQEVYQRFTGTLFMPGDNRPSAVCYLCDAQLVRCWRFFDMCQKSDKICTDLYQNNLEVTQESLTQHNLGWRYNLSTASVKLVADVEEIEITIKEETTAKEEDTSDDEYLMPAFADQIKGDDKRNVPQINEIKESNTACRRINGNRSKKYERRIKSDKTKLKIKEEIVLNREIRLRKSYTCPTCNSTFDQKPLLRKHMATHAEKSSRACKVCNKVFIYSVCLRKHMKNHTEERRYTCNVCGKSYCMKQGLRNHMNTHTGAKPYTCSVCGNSFSSPSTLIKHKTIHTGERPYSCDVCCKKFRQSGDLNRHMKLHTGEKPFTCNICNKSFIKRYILKNHMNIHTGEKPYTCGVCGKSFRNSNTLAFHTVRHAGEKPYTCPICKSVFDLKALLLKHIATHTNNSSYVCKICSKVFVHSILLKQHERIHLDTRRFTCNVCGKTFCRSMGLINHMKTHTGEKPFKCNVCDKSFPRKETLEAHKRIHTGEKPYSCDVCNKKFTFNHGLNTHIKIHTGEKPFSCSICNMSFIGGYKLRRHLKVHSKEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00698837;
90% Identity: iTF_00702202;
80% Identity: iTF_00702202;