Elun007436.2
Basic Information
- Insect
- Eupeodes luniger
- Gene Symbol
- -
- Assembly
- GCA_951509635.1
- Location
- OX608073.1:115975813-115984827[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00062 0.12 14.4 0.1 2 23 68 89 67 89 0.97 2 17 0.28 56 6.0 5.0 1 23 95 118 95 118 0.89 3 17 0.00014 0.029 16.3 0.4 3 23 123 144 121 144 0.94 4 17 0.011 2.1 10.5 0.1 2 19 153 170 152 173 0.92 5 17 0.0002 0.039 15.9 1.7 1 23 181 203 181 203 0.97 6 17 0.00012 0.024 16.6 2.2 1 23 209 231 209 231 0.97 7 17 0.00034 0.067 15.2 2.6 1 23 237 259 237 259 0.95 8 17 5.4 1.1e+03 2.0 5.5 3 22 267 286 265 286 0.92 9 17 0.057 11 8.2 2.7 1 23 592 615 592 615 0.98 10 17 0.47 94 5.3 1.4 1 23 639 661 639 661 0.90 11 17 0.017 3.5 9.8 0.4 1 23 669 693 669 693 0.94 12 17 0.00012 0.024 16.6 0.7 1 23 697 719 697 719 0.98 13 17 7.5e-05 0.015 17.3 0.3 2 21 731 750 730 751 0.92 14 17 0.00024 0.048 15.6 0.4 1 23 759 781 759 781 0.94 15 17 1.8e-05 0.0037 19.2 1.8 1 23 787 810 787 810 0.97 16 17 4.2e-05 0.0085 18.0 0.2 1 23 816 838 816 838 0.98 17 17 0.0022 0.45 12.6 1.6 1 21 844 864 844 865 0.95
Sequence Information
- Coding Sequence
- ATGCCAGAAATAAAAGTTGATTCAACCTCAGTAACATCGGTAGAAACTGAACCAATACCAAAACCTCGTTTAGCCCCATCAAATCTATCTCGTTCACTCCCAATTCCATCTTCTCATAGCAAAGCCGAAACTCGCACCACTCCAAGCATCTCTTCAACAATGATGGTTCAAATAACAACCGACAAGAGCGGACCGAAGCTAGTTTGTCCCGTATGTGACAAAGCACTTGTATCTCTCAACGGCTATGTAAAACACATGAAGAAACATGAACCACCTGGTGGTTATTTATGTAACTATTGTGATGATCGTTTTTGTCTCGAAGATCATCTCAAGAAACACAAagatgaaaaacataaaattctagCATGTCAAATTTGTCATGAGACTTTTGATTCACCGCAGGATTATCGCAATCACATACGAGACATCCACAAAGGTGTCGATCGTCGTATGATTAAATGTGAAAAATGTGGCATGGAATTTAAGACCGCTCAAGCTGCCAAGCGACACAACGAGACACAATGTGGTCAAATCAAACCACATCCCTGTGATCAATGCAAAATGGCCTTTTATACGAAATATAATTTGGCAGAGCATAAAAAGATCCACAGTGGAGAGAAGAAATTCTGTTGTAGCTATTGTGGGAAGAGTTTTATGAGTAACGGCAGATTGGTTATACACGAGAGGAGTCATACCGGTGAAAAGCCCTATAAGTGTGATGTATGTGGCAAATGCTTTGCTCATCGTGAAAGTATCGTAACTCATTCCTCAATCCACACTGGAGTTAAGCTGGTTGTTTGCAAGTGTTGTGGCTCAAGATTTTCCTGTCATTCGAATCTTATTAAACACAGACGAACAAGACCCGATACATGTGGCCTGCCGATTTATAATTCCACCAAAGAAACAAAACGAAATGGAAACTCAAGAATTCCTCCATGTCTGATGTCTTCAGAGATAAAAATTGTACGAGCCAGCAAAGTGATTAAGCCCAAGGATAAGCAGCAGAAAAGAACGAAGCCTATCAATTCAGATGAAGGACAAAAGAAGCCAAAAGCTTCCAAACACAAGGGAAGatcaaaaaaagttgtcaaatctGGTTCAGAAGATGACGACACCGGCAACGATGATAGCGATGACAATGAAGTCATCGTAGCTAGACCAAGGCGTAGTCTTCGTTCAAATGAACTAACTCCAGTTGAAGAAATCGACACTAAACCACCAGAATCCTCATCTAAGGACTTCGATTCTGACAACTATAGCGATGATCCACTTTTCGATAGTCCAATGCACTCAGTTGATGATTCATCGGATAGTGAAAAACCCAAAGTCAAACCAGAGcctatggacaaaaatccagtCGAAATAGTTGATGATGATCGTAGTTGTAGTCCAGTTAAAAGCGAAGAAGATCGAAAGACCGAGGATTTCTTCGATCAAAAGGAAGAAATCCTCGATAAGTTTTTATCCGAAAACACAGTTGATGTTAAATATGAGCCTTTAGTTGAAATCAAAGAAGAATCAGAGGATGCGAAGAAAGATGAGATTCCGCCGCCTCCGACGAGCCAAGTCGTCGTCATTAatgaaactgaaaaagaaaatgaaaagaaatctCCGGCAAAGAGAACACGACGAACGAAGTCGAGTGTTGTTCCTTCCGAAGGCTCAgtcgaagaaaagaaaaacgacGATGTAGACGAATCTGAACAACCTAAAAAGAGACGCCAGCGTTCGGCATTGCGTAAGAAacttcgttttttcaaaaaggaaCGAGTCTATGAATGCAAATTCTGTGCTAAGGTTTATCACATAAAGAAACCCTATGAGAAACATCTCCGCACTCTGCATAAACAATCCGATGCTGATCTGCGTGAATTGTTCAAGGATGAAGATAATGACATTCCAGATGAATACGTGCATCGTTGTCCGATTTGTTCGAAAATCTATCTTATGGCTAAACGACTGACAACGCATATCACTTTCCATGgtcCCGATGGAAGTTTAATTCATAAATGTCCTGGCTATTGCAATTTATATTTTCGCACAAAAGAAGAAGCCCTCGAACATGCCAGGGGAGCTCATAAGGAGTGTTTTTATTGTAACATCTGCGATAAGTACTCACAATCACCAGATGCTCTTAAAATTCACAAACGAACACATTTCGAACAAAGGAGACAAGCAAGTCGTAATTTGATTTGTGACAAATGTGGCAAGTCATTTGCAAGTCGAACATCTCTCAATGATCATTCGAGGTCGAATTGTGGAAAGGATCCTCTGTATCGATGTGATATATGTGATAAGAGATTTAGTACGGCAGGAATTTTAAAGACacattctttgttgcacaaagaTGAACAACCTTATGCGTGTGATAAGTGCGGAAAGAGGTTTAAAATTAAAGCCCAATATAAGACACACATTAAGATGAAACACACAGATAATAAGCCTTTCAAGTGTGATcTTTGCCCGAAAGCATATCCCTATCGGGAGAGCCTTTTAACGCACATGACTGTTCATACGGGACTCAAACGATACTCTTGCAATGGTTGTAGTAAGCGATTTACTTGTATTTCGAATCTTCAAGCCCATCGCAAAGTTTATGCTGATACTTGTGGATTACAACCGTTAAATTCAAAGCCAAGCACTTATTTGGGAGTGCAGAAAGGCCAGCTCTTGATGGGAACAAAACCTTCCTATTAG
- Protein Sequence
- MPEIKVDSTSVTSVETEPIPKPRLAPSNLSRSLPIPSSHSKAETRTTPSISSTMMVQITTDKSGPKLVCPVCDKALVSLNGYVKHMKKHEPPGGYLCNYCDDRFCLEDHLKKHKDEKHKILACQICHETFDSPQDYRNHIRDIHKGVDRRMIKCEKCGMEFKTAQAAKRHNETQCGQIKPHPCDQCKMAFYTKYNLAEHKKIHSGEKKFCCSYCGKSFMSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGSRFSCHSNLIKHRRTRPDTCGLPIYNSTKETKRNGNSRIPPCLMSSEIKIVRASKVIKPKDKQQKRTKPINSDEGQKKPKASKHKGRSKKVVKSGSEDDDTGNDDSDDNEVIVARPRRSLRSNELTPVEEIDTKPPESSSKDFDSDNYSDDPLFDSPMHSVDDSSDSEKPKVKPEPMDKNPVEIVDDDRSCSPVKSEEDRKTEDFFDQKEEILDKFLSENTVDVKYEPLVEIKEESEDAKKDEIPPPPTSQVVVINETEKENEKKSPAKRTRRTKSSVVPSEGSVEEKKNDDVDESEQPKKRRQRSALRKKLRFFKKERVYECKFCAKVYHIKKPYEKHLRTLHKQSDADLRELFKDEDNDIPDEYVHRCPICSKIYLMAKRLTTHITFHGPDGSLIHKCPGYCNLYFRTKEEALEHARGAHKECFYCNICDKYSQSPDALKIHKRTHFEQRRQASRNLICDKCGKSFASRTSLNDHSRSNCGKDPLYRCDICDKRFSTAGILKTHSLLHKDEQPYACDKCGKRFKIKAQYKTHIKMKHTDNKPFKCDLCPKAYPYRESLLTHMTVHTGLKRYSCNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSTYLGVQKGQLLMGTKPSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00665057; iTF_00335299; iTF_00974979; iTF_01318436; iTF_00894187; iTF_00664280; iTF_01396750; iTF_00427503;
- 90% Identity
- -
- 80% Identity
- -