Llat004857.1
Basic Information
- Insect
- Leucozona laternaria
- Gene Symbol
- -
- Assembly
- GCA_932273905.1
- Location
- CAKNZR010000098.1:297139-299856[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00066 0.12 14.2 0.1 2 23 15 36 14 36 0.97 2 17 0.24 44 6.1 5.0 1 23 42 65 42 65 0.89 3 17 0.00035 0.063 15.1 0.4 3 23 70 91 68 91 0.94 4 17 0.0014 0.25 13.2 0.1 2 22 100 120 99 120 0.93 5 17 0.00017 0.03 16.1 1.7 1 23 128 150 128 150 0.97 6 17 0.0001 0.019 16.7 2.2 1 23 156 178 156 178 0.97 7 17 0.00029 0.052 15.3 2.6 1 23 184 206 184 206 0.95 8 17 4.6 8.3e+02 2.1 5.5 3 22 214 233 212 233 0.92 9 17 0.049 8.8 8.3 2.7 1 23 520 543 520 543 0.98 10 17 0.24 43 6.1 2.2 1 23 567 589 567 589 0.94 11 17 0.17 31 6.6 0.6 1 23 597 621 597 621 0.93 12 17 8.8e-05 0.016 17.0 1.2 1 23 625 647 625 647 0.98 13 17 0.0023 0.41 12.5 0.2 2 21 659 678 658 679 0.92 14 17 0.00021 0.037 15.8 0.4 1 23 687 709 687 709 0.94 15 17 7.8e-06 0.0014 20.3 1.6 1 23 715 738 715 738 0.97 16 17 3.6e-05 0.0065 18.2 0.2 1 23 744 766 744 766 0.98 17 17 0.0019 0.35 12.7 1.6 1 21 772 792 772 793 0.95
Sequence Information
- Coding Sequence
- ATGATGGTTCAAATAACAACCGACAAGAGTGGACCTAAATTAGTTTGTCCTGTGTGTGATAAGGCCCTCATCTCACTCAATGGCTATGTAAAGCACATGAAAAAACATGAACCTCCTGGTGGTTACTTGTGCAACTACTGTGATGACCGATTTTGCCTCGAAGATCATCTCAAGAAACATAAAGATGAAAAACATAAGATCCTTGCATGCCAGATATGCCATGAAACTTTTGATTCGCCGCAAGATTATCGCACTCACATTAAGGACATTCACAAAGGCGTCGATCGACGAATGATCAAGTGTGAAAAATGTGGCATGGAATTTAAGACGGCTCAAGCCGCCAAGAGGCACATCGAGACACAATGTGGTCAAATTAAGCCACATCCATGTGATCAATGTAAAATGGCATTTTATACGAAATACAACTTGGCAGAGCACAAAAAGATTCACAGCGGTGAGAAAAAGTTCTGCTGCAGCTATTGTGGGAAGAGTTTTATGAGTAATGGAAGATTAGTAATACATGAGAGGAGTCATACTGGCGAGAAGCCCTATAAGTGTGATGTCTGTGGAAAATGTTTCGCCCATCGTGAAAGTATCGTCACTCATTCCTCAATACATACTGGAGTTAAACTGGTTGTTTGTAAGTGTTGTGGATCTAGATTTTCCTGTCATTCGAATCTCATCAAACACAGACGAACAAGACCCGATACATGTGGCCTAGAAATTTATAACTCCACCAAAGAAACAAAACGAAATGGGAACTCAAGAATTCCTCCTGGCCTGATGTCTTCTGAGATAAAAATTGTTCGAGCTAGCAAAGTTATAAAACCCAACGAAGAGCACAAAAAGCTCAAGACTGCCAATCTCAATGAAATGCAAAAGAAGTCAAAAAAGACTAAAGCAAGGCCCAAAAAACTAAAATCCGATTCAGAAGACGATGATGATGATGATAGTGACGAAGTGATCATCACAAGGCCAAGGCGAAGTCTTCGTACTAAGGAAACCACCAATTCTATTGAAGAATTTGATAGTAAACCGCCGGAATCACCTACGAAGGACTTCGATTCCGACAATTATAGCAATGATCCACTATTTGATAGCCCAATGCACTCCGTTGATTCGTCCGATAGCGAAAAGCCTATAGTCAAACCAGAGCCTTTGGAAAAAATCCCTGTTGAAGCAGTTGATGCCCCAGTTAAAACCGAAGATGATCAAAAGGGCGAAGAAATCTTCAACCAGCAGGAAGAAATTTTAGAAAAAATTCTATCCGAAAATACAGTCGAGGTCAAATACGAACCTATAGTTGAAATCAAAGAAGAATCAGAGGATGTAAAGAAAGATGAATATTCGCTTCTTAAGCCCTGTAAAGTAATACTTGAAGCCGAAAATGAAAAAAAGACTCTAACAAAGAGAACTAGGAGAAAGAAGGCAGACTCCGTTCCTGAAGGTTCTATCGTTGAAAAGAAAATCGATCTGGAGGAACCAGAACTTCCAAAAAAGAGACGCCAGCGTTCGGCGTTGCGTAAGAAACTTCGCCTGTTCAAAAAGGAACGAGTATACGAATGCAAATTCTGTGCGAAGGTCTATCATATAAAGAAACCCTATGAGAAACATCTTCGGACTTTGCATAAAAAGTCCGACGATGAGCTCCGAGAATTATTTAAGGATGAAGATAATGACATTCCAGATGAATATGTGCACCGCTGTCCGATATGCTCAAAGATCTATCTTATGGCTAAACGACTGAAGACTCATATGACTTTCCATGGTCCCGATGGAAGTTTAGTTCACAAATGTCCTGGCTATTGCAAAATGTATTTTCAAACAAAAGAAGAAGCCATGGAGCATGCCAAGGAAGCCCATAAAGAGTGTTTTTATTGTAACATCTGCGATAAGTACTCACAATCTCCGGATTCTCTTAAGATTCATAAACGGACGCATTTCGAGCAAAGGAGACAAGCAAATCGCAATTTGATTTGTGATAAATGTGCCAAATCTTTTGCAAGTCGGACATCGCTTAATGATCATTCTAGGTCAAATTGTGGAAAAGATCCACTCTACCGTTGTGATATTTGTGATAAGAGATTCAGCACAGCTGGGATTTTAAAGACACATTCTTTGTTGCACAAGGATGAAACACCCTATGCGTGTGATAAGTGTGGAAAGACTTTTAAAATTAAAGCCCAGTATAAGACACACATTAAGATGAAGCACACCGACAATAAGCCTTTTAAGTGTGAGCTTTGTCCAAAAGCATATCCTTATCGAGAAAGCCTGTTAACACACATGACTGTCCATACAGGGCTCAAGCGTTATTCATGCAATGGATGCAGCAAACGGTTTACTTGTATATCAAATCTTCAAGCTCATCGCAAAGTTTATGCTGATACTTGTGGATTGCAGCCGTTAAATTCGAAACCAAGCACTTATTTAGGTGTGCAGAAGGGCATGCTTCTGATGGGAACAAAACCTTCTTATTAG
- Protein Sequence
- MMVQITTDKSGPKLVCPVCDKALISLNGYVKHMKKHEPPGGYLCNYCDDRFCLEDHLKKHKDEKHKILACQICHETFDSPQDYRTHIKDIHKGVDRRMIKCEKCGMEFKTAQAAKRHIETQCGQIKPHPCDQCKMAFYTKYNLAEHKKIHSGEKKFCCSYCGKSFMSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGSRFSCHSNLIKHRRTRPDTCGLEIYNSTKETKRNGNSRIPPGLMSSEIKIVRASKVIKPNEEHKKLKTANLNEMQKKSKKTKARPKKLKSDSEDDDDDDSDEVIITRPRRSLRTKETTNSIEEFDSKPPESPTKDFDSDNYSNDPLFDSPMHSVDSSDSEKPIVKPEPLEKIPVEAVDAPVKTEDDQKGEEIFNQQEEILEKILSENTVEVKYEPIVEIKEESEDVKKDEYSLLKPCKVILEAENEKKTLTKRTRRKKADSVPEGSIVEKKIDLEEPELPKKRRQRSALRKKLRLFKKERVYECKFCAKVYHIKKPYEKHLRTLHKKSDDELRELFKDEDNDIPDEYVHRCPICSKIYLMAKRLKTHMTFHGPDGSLVHKCPGYCKMYFQTKEEAMEHAKEAHKECFYCNICDKYSQSPDSLKIHKRTHFEQRRQANRNLICDKCAKSFASRTSLNDHSRSNCGKDPLYRCDICDKRFSTAGILKTHSLLHKDETPYACDKCGKTFKIKAQYKTHIKMKHTDNKPFKCELCPKAYPYRESLLTHMTVHTGLKRYSCNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSTYLGVQKGMLLMGTKPSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694877;
- 90% Identity
- iTF_00335299;
- 80% Identity
- -