Svit007806.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:88926229-88928974[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00065 0.097 14.2 0.1 2 23 15 36 14 36 0.97 2 17 0.24 36 6.1 5.0 1 23 42 65 42 65 0.89 3 17 0.00015 0.022 16.2 0.3 3 23 70 91 68 91 0.93 4 17 0.009 1.3 10.6 0.1 2 19 100 117 99 120 0.92 5 17 0.00016 0.024 16.1 1.4 1 23 128 150 128 150 0.97 6 17 0.0001 0.016 16.7 2.2 1 23 156 178 156 178 0.97 7 17 0.00029 0.043 15.3 2.6 1 23 184 206 184 206 0.95 8 17 4.6 6.9e+02 2.1 5.5 3 22 214 233 212 233 0.92 9 17 0.048 7.3 8.3 2.7 1 23 525 548 525 548 0.98 10 17 0.39 59 5.4 1.7 1 23 572 594 572 594 0.91 11 17 0.0063 0.95 11.1 0.5 1 23 602 626 602 626 0.95 12 17 0.0001 0.016 16.7 0.9 1 23 630 652 630 652 0.98 13 17 0.0022 0.34 12.5 0.2 2 21 664 683 663 684 0.92 14 17 0.0016 0.23 13.0 1.5 1 19 692 710 692 714 0.89 15 17 7.7e-06 0.0012 20.3 1.6 1 23 720 743 720 743 0.97 16 17 3.5e-05 0.0053 18.2 0.2 1 23 749 771 749 771 0.98 17 17 0.0019 0.29 12.7 1.6 1 21 777 797 777 798 0.95
Sequence Information
- Coding Sequence
- ATGATGGTTCAAATAACAACCGACAAATCGGGACCAAAATTAGTTTGTCCTGTCTGCGATAAAGCCCTTATCTCACTCAATGGCTATGTGAAGCACATGAAAAAACATGAACCTCCTGGTGGTTATCTGTGCAACTACTGCGATGATCGTTTTTGTCTCGAAGATCAtctcaaaaaacacaaagatgaaaaacacaaaatcctggCATGTCAGATATGCCATGAAACTTTCAACTCACCAGAAGATTATCGAACTCACATTCAAGATGTTCACAAAGGCGTCGATCGAAGAATgattaaatgtgaaaaatgtggcaTGGAATTTAAGACGGCTCAAGCGGCCAAAAGACACAATGAAACACAATGTGGTCAAATAAAGCCACATCCGTGTGATCAATGTCAAATggcattttatacaaaatacaatttggCCGAACACAAAAAGATCCATAGTGGAGAGAAAAAGTTCTGTTGCAGCTATTGTGGGAAGAGTTTTATGAGCAATGGTAGATTAGTTATACATGAGAGGAGTCATACTGGCGAGAAGCCTTACAAGTGTGATGTTTGTGGAAAATGTTTTGCCCATCGTGAGAGCATCGTTACTCATTCCTCAATACACACCGGAGTCAAACTGGTTGTTTGCAAGTGCTGTGGATCAAGATTCTCATGTCATTCGAATCTTATCAAACACAGACGAACAAGACCCGATACATGTGGCCTGGCAATTTATAATTCCACtaaagaaacgaaacgaaaTGGAAGTTCAAGAAttcctGCTGGGTTGATGTCTTCTGAGATAAAAATTGTTCGAGCAAGCAAAGTtttaaaagagcaaaaaaaacctaaacctGTGAATCCCAATGAAGAGCAAAAGAAACCAAAGGTGGTGAAACCTAGAGCTAggtccaaaaaaattaaatccgaATCAACAGACGATGATGAGGCAGATGATGATAGTGAAGAAATTATCGTAGCACGACCAAGACGAAGTACTCGTTCTAAGGAACCCATTCCTATGGAAGAAATTGATAGTAAACCACCCGAATCACCTTCGAAGGATTTCGATTCCGATAATTACAGCGATGATCCACTTTTCGATAGCCCAGTGCACTCAGTTGAATCAGACTCCGAAGGCGAAAAGCCTTTAGTCAAGCCAGAGCCTTTGGAAAAAATCCAATTAGACGCTGATGTTGATGATGCTGCTCTAGTTAAAACTGAAGAAGATCATAAAACCGATGATTTTTTCAACCAACAagaagaaattttagaaaaatttctaTCTGAACATCCAGGCGAAGATGTCAAGTATGAACCTTTAATTGTGATCAAAGAAGAAACCGAAGACATTAAGAAAGATGATTATCCACCCTGTGAAGTGGTGCTTGAAGTTGAAAAGGAAGAGAACAAGTCTCCAACAAAGAGAACTAGGCGAAAGAAATCAGAATGTGCTGCTCGTAAAGACGCCTCTGGGGATGTTAAGAATGACGAATTGGAAGAATCTGAGCCTCCAAAAAAACGACGTCAGCGTACAACGTTGCGTAAAAAGCTTCGTTTCTTCAAAAAGGAACGAGTTTATGAATGCAAATTTTGTGCAAAGGTCTATCATATAAAGAAACCATACGAGAAACATCTGCGGACTCTGCATAAACAGACCGATGAGGAGCTCCGGGAATTTTTTAAGGATGAAGATAAAGACATTCCAGATGAATATGTACATCGCTGTCCGATTTGTTCGAAAATCTATCTAATGGCTAAGCGACTTAAGACTCATATAACTTTTCATGGTCCTGATGGAAGTTTAGTTCACAAATGTCCTGGCTATTGCAAAATGTATTTCACAACAAAAGATGAAGCTATGGAACATGCTAGGGCAGCTCACAAGGAATGTTTTTATTGCGAAATTTGCGACAAATACTCACAATCTCCGGATTCTCTTAAAATTCACAAACGAACACATTTCGAGCAAAGGAGGCAAGCAAATCGCAATTTGATTTGTGACAAATGTGCTAAATCTTTTGCAAGCCGGACATCGTTAAACGATCATTCCCGATCGAATTGTGGAAAAGACCCGCTATATCGATGTGATATTTGTGATAAAAGATTCAGCACAGCTGGAATTTTAAAGACACATTGTTTGTTGCATAAAGATGATACACCATATGCGTGTGATAAGTGTGGAaagacatttaaaattaaagctcAGTATAAGACTCATATTAAGATGAAGCATACGGATAATAAACCATTCAAGTGTGAgCTATGCCCCAAAGCATATCCATATCGAGAAAGTCTTTTGACACACATGACTGTTCATACGGGACTCAAACGTTATTCATGCAATGGATGCAGCAAACGATTTACTTGTATATCAAATCTTCAAGCTCATCGCAAAGTATATGCTGATACTTGTGGTTTGCAGCCTTTGAATTCAAAACCTAGCACTTATTTGGGAGTGCAGAAGGGGCAGCTTCTAATGGGAACAAAGCCTTCTTATTAG
- Protein Sequence
- MMVQITTDKSGPKLVCPVCDKALISLNGYVKHMKKHEPPGGYLCNYCDDRFCLEDHLKKHKDEKHKILACQICHETFNSPEDYRTHIQDVHKGVDRRMIKCEKCGMEFKTAQAAKRHNETQCGQIKPHPCDQCQMAFYTKYNLAEHKKIHSGEKKFCCSYCGKSFMSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGSRFSCHSNLIKHRRTRPDTCGLAIYNSTKETKRNGSSRIPAGLMSSEIKIVRASKVLKEQKKPKPVNPNEEQKKPKVVKPRARSKKIKSESTDDDEADDDSEEIIVARPRRSTRSKEPIPMEEIDSKPPESPSKDFDSDNYSDDPLFDSPVHSVESDSEGEKPLVKPEPLEKIQLDADVDDAALVKTEEDHKTDDFFNQQEEILEKFLSEHPGEDVKYEPLIVIKEETEDIKKDDYPPCEVVLEVEKEENKSPTKRTRRKKSECAARKDASGDVKNDELEESEPPKKRRQRTTLRKKLRFFKKERVYECKFCAKVYHIKKPYEKHLRTLHKQTDEELREFFKDEDKDIPDEYVHRCPICSKIYLMAKRLKTHITFHGPDGSLVHKCPGYCKMYFTTKDEAMEHARAAHKECFYCEICDKYSQSPDSLKIHKRTHFEQRRQANRNLICDKCAKSFASRTSLNDHSRSNCGKDPLYRCDICDKRFSTAGILKTHCLLHKDDTPYACDKCGKTFKIKAQYKTHIKMKHTDNKPFKCELCPKAYPYRESLLTHMTVHTGLKRYSCNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSTYLGVQKGQLLMGTKPSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694877;
- 90% Identity
- -
- 80% Identity
- -