Mqua009251.2
Basic Information
- Insect
- Melangyna quadrimaculata
- Gene Symbol
- -
- Assembly
- GCA_949320155.1
- Location
- OX439483.1:137008073-137011128[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00066 0.17 14.5 0.1 2 23 26 47 25 47 0.97 2 17 0.14 37 7.1 3.2 1 23 53 76 53 76 0.89 3 17 0.0015 0.38 13.4 0.3 3 23 81 102 79 102 0.93 4 17 0.0092 2.4 10.9 0.1 2 20 111 129 110 131 0.92 5 17 0.00016 0.043 16.4 2.7 1 23 139 161 139 161 0.98 6 17 0.00013 0.034 16.7 2.2 1 23 167 189 167 189 0.97 7 17 0.00036 0.094 15.3 2.6 1 23 195 217 195 217 0.95 8 17 5.7 1.5e+03 2.1 5.5 3 22 225 244 223 244 0.92 9 17 0.061 16 8.3 2.7 1 23 541 564 541 564 0.98 10 17 0.3 78 6.1 2.2 1 23 588 610 588 610 0.94 11 17 0.058 15 8.3 0.5 1 23 618 642 618 642 0.93 12 17 0.00013 0.034 16.7 0.9 1 23 646 668 646 668 0.98 13 17 0.0028 0.73 12.5 0.2 2 21 680 699 679 700 0.92 14 17 0.002 0.51 13.0 1.5 1 19 708 726 708 730 0.89 15 17 9.6e-06 0.0025 20.2 1.6 1 23 736 759 736 759 0.97 16 17 4.5e-05 0.012 18.1 0.2 1 23 765 787 765 787 0.98 17 17 0.0024 0.62 12.7 1.6 1 21 793 813 793 814 0.95
Sequence Information
- Coding Sequence
- ATGTGGCGCTGGGCTCCTAGCATCTCTTCTACAATGATGGTTCAAATAACAACCGACAAAACCGGACCTAAATTAGTTTGTCCGGTGTGTGATAAGGCCCTTGTCTCCCTCAATGGCTATGTTAAGCATATGAAAAAACATGAACCTCCTGGTGGTTACTTATGCAACTACTGTGATGATCGTTTCTGCCTTGAAGATCAACTCAAGAAACATAAAGATGAAAAACATAAGATCCTTGCATGCCAGATATGCCATGAGACTTTTGATTCTCCCCAAGGTTATCGCACTCACATCAACGACATTCACCAAGGTATCGATCGGCGAATGATAAAGTGTGAAAAATGTGGCATGGAATTTAAGACGGCTCCAGCTGCCAAGCGGCACACCGACACACAATGTGGCCAAATTAAGCCACATCAGTGTGATCAATGTAAAATGGCATTTTATACGAAATACAATTTGGCCGAGCACAAGAAGATCCATagtggagagaaaaaattctGCTGTAGCTATTGTGGCAAGAGTTTTATGAGCAATGGCAGATTGGTAATACATGAGAGGAGTCATACGGGCGAGAAGCCCTATAAGTGTGATGTCTGTGGCAAATGCTTTGCCCATCGTGAAAGTATCGTCACTCATTCATCAATACATACCGGAGTAAAGCTCGTTGTTTGTAAGTGCTGTGGCTCAAGATTCTCCTGCCATTCGAATCTTATCAAACACAGACGAACAAGACCCGATACATGTGGCCTGGAGATTTATAACTCCACCAAAGAAACAAAACGAAATGGAGTCTCAAGAAttccgCCCGGTTTAATGTCATCTGAGATAAAAATTGTTCGAGCAAGCAAAGTTATAAAACCCAACGAAGAACAAAAAAAGCCACCCAAAGCTGTCCAATCCAATGAAGAGGAAAAGAAGCCAAAAGTAACCAAACCTAGGGCAAgagccaaaaaaatcaaatccgaTTCAGAAGACGATGCTCACGATGACGACGATGGTGAAGAAGTTATCATATCAAGACCAAGGCGCAGTCTTCGTTCGAAGGATGTCATTCCACCTATTGAAGAAATCGATAATAAACCACCAGAATCACCGTCGAAGGATTTCGATTCCGATAATTACAGCGATGACCCACTTTTTGATAGTCCAATGCACTCAGTTGAATCCTCTGACAGCGAAAAGCCAATAGTCAAACCAGAGCCTATGGAAAAAATTAACATCGACGTAGACGATACTTCTGTTAAATCTGAAGAAGACGAGAAGGGCGATAATTTCTTCAACCAACAGGAAGAAATTCTAGAGAAATTTCTATCCGAACATACAGTTGATGTTAAATACGAACCTTTAGTTGTAATCAAAGAAGAATCAGAAGATGTAAAGAAAGATGAGTTGCCGCTTCTAAAGTCCTCTGAAGTGGCTGTAGAAGCTCAAACTGAAAAAAAGACTCTAACAAAGAGAACCACCAGACAAAAGAACTCGGATAGTGGTGGTGTTCCGTCTAAGGACGACTTAATCGATGAAAAGAAAATCGAATTGGAAGAATCAGAACCTCCTAAAAAGAGACGTCACCGTGGGGGATTGCGTAAGAAACTACGCCTCTTCAAAAAGGATCGAGTGTATGAATGTAAATTTTGTGCGAAGGTTTATCACATAAAGAAGCCTTACGAGAAACATCTTCGGACCCTGCACAAAAAGTCAGATGCTGAACTGCGGGAATTGTTCAAGGATGAAGATAATGACATTCCAGATGGATATGTGCATCGTTGTCCCATTTGTTCGAAGATTTATCTTATGGCTAAAAGACTTAAGACTCATATGACTTTCCATGgtcCCGATGgaagtttaattcacaaatgtCCTGGCTATTGCAAAATGTATTTTGAGACAAAAGACGAAGCTATGGAGCATGCGAAGGAAGCCCACAAGGAATGTTTTTATTGTGAGATCTGCGATAAATACTCACAATCGCCGGATTCTCTTAAGATTCATAAACGAACGCATTTCGAGCAAAAAAGGCAGATAAATCGCAATTTGATTTGTGATAAGTGTGCCAAGTCTTTTGCAAGTCGGACATCGCTTAACGATCATTCGAGGTCGAATTGTGGAAAAGATCCACTGTATCGGTGTGATATTTGTGATAAGAGATTCAGCACAGCTGGTATTTTGAAGACACATTGTTTGTTGCATAAGGATGAAACACCATATGCGTGTGATAAGTGCGGaaagacatttaaaattaaagccCAGTATAAGACACACATTAAGATGAAGCACACCGATAATAAGCCTTTCAAGTGCGagctcTGCCCCAAAGCATATCCCTATCGAGAGAGCCTTCTAACACACATGACTGTTCATACAGGACTCAAACGTTATTCATGCAATGGGTGTAGCAAACGGTTTACTTGTATATCAAATCTTCAAGCTCATCGTAAAGTGTATGCTGATACTTGTGGATTACAGCCATTAAATTCGAAACCAAGTACTTATTTGGGAGTGCAGAAGGGCATGCTTCTGATGGGAACAAAACCTTCGTTCTAA
- Protein Sequence
- MWRWAPSISSTMMVQITTDKTGPKLVCPVCDKALVSLNGYVKHMKKHEPPGGYLCNYCDDRFCLEDQLKKHKDEKHKILACQICHETFDSPQGYRTHINDIHQGIDRRMIKCEKCGMEFKTAPAAKRHTDTQCGQIKPHQCDQCKMAFYTKYNLAEHKKIHSGEKKFCCSYCGKSFMSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGSRFSCHSNLIKHRRTRPDTCGLEIYNSTKETKRNGVSRIPPGLMSSEIKIVRASKVIKPNEEQKKPPKAVQSNEEEKKPKVTKPRARAKKIKSDSEDDAHDDDDGEEVIISRPRRSLRSKDVIPPIEEIDNKPPESPSKDFDSDNYSDDPLFDSPMHSVESSDSEKPIVKPEPMEKINIDVDDTSVKSEEDEKGDNFFNQQEEILEKFLSEHTVDVKYEPLVVIKEESEDVKKDELPLLKSSEVAVEAQTEKKTLTKRTTRQKNSDSGGVPSKDDLIDEKKIELEESEPPKKRRHRGGLRKKLRLFKKDRVYECKFCAKVYHIKKPYEKHLRTLHKKSDAELRELFKDEDNDIPDGYVHRCPICSKIYLMAKRLKTHMTFHGPDGSLIHKCPGYCKMYFETKDEAMEHAKEAHKECFYCEICDKYSQSPDSLKIHKRTHFEQKRQINRNLICDKCAKSFASRTSLNDHSRSNCGKDPLYRCDICDKRFSTAGILKTHCLLHKDETPYACDKCGKTFKIKAQYKTHIKMKHTDNKPFKCELCPKAYPYRESLLTHMTVHTGLKRYSCNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSTYLGVQKGMLLMGTKPSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694877;
- 90% Identity
- -
- 80% Identity
- -