Egri017934.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- lolal
- Assembly
- GCA_017562165.1
- Location
- chr01:21839393-21882860[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-16 3e-13 49.3 0.0 1 42 325 367 325 370 0.94
Sequence Information
- Coding Sequence
- ATGTCACAACAGTACAGCTTGCGGTGGAACAACCACCAGCCAAACTTCATCTCAATGTTCACTACATTGCTCAATACACAGACTCTGGTGGATGTGACATTAGCTGCAGAAGGAAAGCATATGCAAGCCCACAAAGTGGTGCTGTCGGCTTGCAGTACATATTTCCAGGCTTTGTTTGTCGACAATCCATCGCACCACCCTATTGTGATCCTCAAGGATGTGACGTTCGCAGATCTGCGTACCATGGTGGATTTCATGTACTATGGGGAAGTCAACGTAACCGAAGAGCAGTTGCCGCAGGTTCTGGAAACGGCGAAGCTGCTTAAAATTAAGGGTCTGACGGAGATGCCGGAATCGACGTTGACTCGCGCGCAGGGCGCCGGCGGAGCGCCCGGCGACTACGCCCCTCCCGGCGAGGCCGCAGACCCCCAGCGGATGGCCACCCCTGCCACATCGCCCTCCAATAAACGAAGAAGTATCCACAGACGAAGGAAAAGCTCGACGGGCTCGCCGTGCCTGAACATGGTGTCAGAGGAGGGTCGGGAGGAGAACCAGACGGTTGAGCTGGTGCGGGACGGGATCACGCTCAGCAGCGTGCCGCAGCGGCGGCGCGACTACCACGACGACAGGCACCAGGACACCTCGCAACAGacttcagaaaacgcTCACTTGAACATGGATCCATTAGGAGTAGAAAACCCGGCCAGTATAGCTCAAGGAGGGCAGTGGAGTATGATGGAGCACGCGTACCCGCGGTACTCGGGGGCGTGCGGGCTCGGCGGCGTCGTGCAGCCGGAGGGCGGGCTCTACATGAACAACCTGGCGCCGCACGACGGCGACCTCGGCGAGTACGCGCTGCCGGCGCCCGTGGCGCACGCCTCGCCCGGGCCCTCGTGCGCCGCCGAGCCGCCGCCGCACCACGACGCGCCGCACCAGCCTCAGCCCAAGCGCCGCCGCACCACCAACCCCCAGTCCGAGGAAAACTTCCAGCGCGCCCTCGAGGCCGTCCGCTTCGGCGGCATCGGCTTCTGCAAGGCCGCCCGCATGTTCGGCGTCAACAACAGGACCCTCTGGCTCGAGTACAAGAAGAAGGGCTACCCCAACAACCGGCCGAGCATCAAGAGCCGCATCAAGCGCGAGCACACGACGCCGCCGCCGGAGCACAAGGACGAGCCGCCGCCGCCCGACCACCAGATGGCGCTGCTGTGCCCGCCGCACCCCGTCTCCGTGGGCTTCATCGAGTCGCGGCCCATCGACTTCCCGCTGCAGGGCATGCCGCACAGCTCGCCGCTCAACATCCTCGGCGTGAACTTCAACTCGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHMQAHKVVLSACSTYFQALFVDNPSHHPIVILKDVTFADLRTMVDFMYYGEVNVTEEQLPQVLETAKLLKIKGLTEMPESTLTRAQGAGGAPGDYAPPGEAADPQRMATPATSPSNKRRSIHRRRKSSTGSPCLNMVSEEGREENQTVELVRDGITLSSVPQRRRDYHDDRHQDTSQQTSENAHLNMDPLGVENPASIAQGGQWSMMEHAYPRYSGACGLGGVVQPEGGLYMNNLAPHDGDLGEYALPAPVAHASPGPSCAAEPPPHHDAPHQPQPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKDEPPPPDHQMALLCPPHPVSVGFIESRPIDFPLQGMPHSSPLNILGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635528; iTF_00033026; iTF_00033929; iTF_00033744; iTF_00032830; iTF_00826753; iTF_00825515; iTF_00827121; iTF_00825920; iTF_00666633; iTF_00666433; iTF_00649940; iTF_00650151; iTF_00926519; iTF_00926738; iTF_00207097; iTF_00206923; iTF_00205982; iTF_00206212; iTF_00143007; iTF_00143164; iTF_00649247; iTF_00649032; iTF_00634239; iTF_00634613; iTF_00044384; iTF_00044618;
- 90% Identity
- iTF_00634239;
- 80% Identity
- iTF_00635528;