Amar020089.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- lolal_1
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000259.1:634893-642143[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-16 4e-13 49.2 0.0 1 42 341 383 341 386 0.94
Sequence Information
- Coding Sequence
- ATGTCACAGCAGTACAGTTTGCGGTGGAACAACCACCAGCCCAACTTCATCTCAATGTTCACTACATTGCTCAACACCCAGACCCTGGTGGATGTGACTTTGGCTGCCGAGGGAAAGCACCTGCAGGCCCACAAAGTGGTATTGTCGGCGTGCAGCACGTATTTCCAGGCCTTGTTTGTGGAGAACCCGTCGCACCACCCCATAGTGATCCTCAAGGATGTGACATTCGCAGACCTGCGCACGATGGTCGACTTTATGTACTACGGAGAGGTCAACGTTACGGAGGAGCAGTTGCCGCAGGTGCTGGAAACAGCGAAACTGCTCAAAATCAAGGGTCTGACCGAGATGCCGGAGTCGACGCTGACCAGGGCGCAGGGCGCCGGCAGCGGCGTCGGCGGCGGTGGGGGCGGGGGCAGCGCGCAGGGTCCCGATTTCGCACCACCCTCCGAGCCTAACGATTCACAGCGGATGTCCACGCCTGCCACCTCGCCTTGTAACAAACGAAGAAGACGTAGGAAAAGCTCGACGGGTTCTACGTCACTGAACTTGGTGCAGGAGGAAGTTCGCGACGACAATCAAACTGTCGAGCTAGTCCGAGACGGCATCACTCTCAGCAGCGTGCCGCAGCGGCGGCGAGACTTCCACGACGACCGGCACCCGGACACTGTGCAACAGACATCGGACAACACACACATGAATATGGATCCGTTAGGAGTAGAAAATTCAGCCAGTATAGCCCAAGGAGGGCAGTGGAGTATGATGGAGCACGCGTACCCGCGGTACTCGAGCGCGTGCGGGCTCGGCGGCGGCGGCGGCGGAGCCGGCGGCGTGCAGCCCGAGGCAGGGCTCTATATGCACAACTCTCTGAACCAGCACGTCGAGGGTGACCTCGGCGAGTATGCGCTCGCGGCTGGCGTGGCGCACCCCAGCCCGGGGCCCTCGTGCGCCGCCGAGCCGCCGCACCTCGACCCGCCCCACCACCAGCCCCAGCCCAAGCGCCGCCGTACCACCAACCCACAGTCTGAAGAGAATTTCCAGCGCGCGCTTGAAGCCGTCCGCTTCGGCGGCATCGGGTTCTGCAAGGCGGCGCGTATGTTCGGCGTCAACAACAGGACGCTCTGGCTCGAGTACAAGAAGAAGGGCTACCCCAACAACCGGCCTAGCATCAAGAGCCGCATCAAACGCGAGCACACCACGCCGCCGCCCGACCACAAGGACGACCCGCTGCCGCCCGACCACCAGATGGCGCTGCTGTGCCCGCCGCACCCCGTCTCCGTAGGGTTCATCGAGTCACGCCCCATCGACTTCCCGCTCCAGGGCATGCCGCATGGCTCGCCGCTAAACATCCTCGGTGTCAACTTCAACTCGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLQAHKVVLSACSTYFQALFVENPSHHPIVILKDVTFADLRTMVDFMYYGEVNVTEEQLPQVLETAKLLKIKGLTEMPESTLTRAQGAGSGVGGGGGGGSAQGPDFAPPSEPNDSQRMSTPATSPCNKRRRRRKSSTGSTSLNLVQEEVRDDNQTVELVRDGITLSSVPQRRRDFHDDRHPDTVQQTSDNTHMNMDPLGVENSASIAQGGQWSMMEHAYPRYSSACGLGGGGGGAGGVQPEAGLYMHNSLNQHVEGDLGEYALAAGVAHPSPGPSCAAEPPHLDPPHHQPQPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPDHKDDPLPPDHQMALLCPPHPVSVGFIESRPIDFPLQGMPHGSPLNILGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635310;
- 90% Identity
- iTF_00666633;
- 80% Identity
- iTF_00033929;