Ecre043441.1
Basic Information
- Insect
- Ectropis crepuscularia
- Gene Symbol
- -
- Assembly
- GCA_963693475.1
- Location
- OY856365.1:2414425-2417461[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0024 0.34 12.9 5.5 1 23 158 181 158 181 0.95 2 16 0.00028 0.04 15.9 1.6 1 23 190 213 190 213 0.96 3 16 0.0095 1.4 11.0 0.2 3 23 227 248 226 248 0.97 4 16 0.00054 0.076 15.0 0.7 1 23 257 280 257 280 0.96 5 16 0.00015 0.022 16.7 3.0 1 23 291 314 291 314 0.98 6 16 0.00048 0.068 15.1 1.1 2 23 343 365 342 365 0.97 7 16 0.0012 0.17 13.9 1.5 2 23 375 397 374 397 0.96 8 16 0.48 68 5.7 0.4 2 19 402 419 401 422 0.90 9 16 0.0012 0.17 13.9 1.0 2 21 427 446 426 449 0.94 10 16 2.1 3e+02 3.7 1.6 3 23 459 480 458 480 0.92 11 16 0.0019 0.27 13.2 2.8 1 23 485 508 485 508 0.94 12 16 5.6e-05 0.0079 18.1 2.7 1 23 519 542 519 542 0.98 13 16 0.0037 0.53 12.3 3.8 1 23 561 584 561 585 0.94 14 16 0.013 1.8 10.6 1.9 3 23 618 638 616 638 0.97 15 16 0.016 2.3 10.3 0.2 1 23 704 726 704 726 0.97 16 16 0.2 28 6.9 2.0 1 23 732 755 732 755 0.96
Sequence Information
- Coding Sequence
- ATGTCGGCAGAAGCCACACCGTCACTTATCCCCGAAGGTTTAGACACGAAAAAGAAAGACCTACGAAAAGATCCAACAACCTTCCTCCCCCAAGAAGAGATGACCtatgaaataaagaaaaaaaagaaaaagaaaaaaaagaaacaagaagaCCCGTTCAAAGATATCGAGGAGAAAATGGCGGTAGTTAGAGAACCGGATATCACCGCGTTGGATCCGGACATCGGGATGGATCCCGAAGTTACTATTAAAGTTGAGAATATTGAAGTAGATTTGGATTTTAATGATTTTATGAGTAATGATTACGAGCCCGCCCAAGACGACGAAACGATGCCGGAGCCAGAGGTCAAGCTCGAGGAACAGAGCAAAGACGCGGTCATCCTCACCTTCGAAAACGTCATCAGCGACAAACTCCGCTACGGCGAAATCCCGTCCAACGACGAAAACGGCGACGGCGACCTCACACACAACCATTTCTGTAAAGTCTGCCACCTCGTATTCAAAAACCCTAGAACATTGCTCATGCATCAGAAAAGGAAGCACAAAACATTTAGACGATTCTTCGAACATATTTGCGACCATTGCGGTATGTCCTACGATGCTAAAAATAGTTTGATTGCTCATATTAGGAGAAAGCACGGCCCCGATGCTAATGAAGATGATATGAAGGAACGCGCTTGTGATATCTGTGCGCTCGTGTTTAAGGGGTTGGGGAGATTGAGGATGCATATGCGAAGGAAACATGGTGCGTATGAAGACTCCTTCAAACATGCTTGCGAGGATTGCGGCCTCACCTATGAGAAATACGCAAGTCTGATCGTCCACAGACGAAGAAAACACTGTGGTGCACCTAAACAGAAGCCTCAATGGTACACCTGCCCATTCTGCTCCAAGCTATTCTCTAGAAGAGAAACCTACTCTCGCCACATTCAACGGAAACACAAAGTGGACGACGAAGATCAAATTAATCCCGAATCGGAAAAAGTTTTAAAGAACACGGTAAAGAATGAGAAGTCTGGTGAAGTGACGTGCACTTTCTGTCCGTTGATGTTTTCTTCTATGATGTACTTAAAGCTCCATATGAGGAGGAAGCACAACGTGTTGGCTGATGATTTTAAGTTGAAGTGTAAATTGTGCAATTTGTCGTACGACAAAGTCGAAAGCTTGAAACGACATGTGAGAAGAAAGCACGAACCAGGGACGTACTGCGAAGTTTGCAGTAAACAGTTCCCGACAATAGAAGCGTACTTAAACCATTCTCATAAGAAAGTCGTAAAGGAATGCAACATGTGCGGACTTATTTTCGCGACTCAAGGGGGCCTGTCGAAGCATCTGAGGTGTACGCACAAAGTTCCGATGCCCAACACGGTGTTCTGCACTATATGCAACGCTGGCTTCCACGAGAAACGTCAATTAAAACCTCACTTTATGAGGGTACATTTACAAATGAGTTATCCGTGCCAGTTTTGCAGTAAGATGTTCAAAGCTAAAGAAAGCTACAGGCGGCATCTGATGTTCAAACATCCGACCAATTACATAGAGGAAGCTAAGACGCATCAGTGTGAAAAGTGTCCTGAGAAGTTTGTGAACGAATTCGAACTCTGTAAGCATATAAATACGGCTCATAGAGACCCGCAAGTCGTTATAAAGAAAGAGGAGAAAGACGTTATACCAGATTTATTTAAATGCACTAAGTGTCCCCACGAGTATAACACGTGGGACGAACTTAAATACCATTTCGAGTCGGTTCACCACGCGAACGAAGAAACCCAGTGTCAGAAGTGCGGAGAACTCTTACCCAGGAACGAGTTACCTAAACATATGAAATCACACGAAGAAGTAGAAATGGActgtaaatattgtgaatttaagACTAAAAGTCGCGTGAGCATGACTCAGCACATGCTCAGGCACAAGAACGCAGCAACATTGAACTGTGATTTTCACGGATGTCGCTACAAAACATTTTACGAAGACGCCATGGCGAAGCATAAGAGACGCCATGTCGATTTAGGTGTAAAATTGCAGTGTGCCAGTTGTCCGTTTCAAACgatgaataaatatatattgaaaTACCACGAAGAGGCCCATTCTACGGGCAAGAAACGTTACTCCTGTGATCAGTGCGATTATGCGACAATTTTGCCGGCAAACTTGGtgcaacataaatataaacattccaCAATAAAGAGGTTCAAATGTGAAGTCTGTCCGTTCGCCACTAAGTATAATACGTCATTACGTTTTCACGTTAAAAAGAAACATTGTGATCTCCCTACTCTGAGGTAG
- Protein Sequence
- MSAEATPSLIPEGLDTKKKDLRKDPTTFLPQEEMTYEIKKKKKKKKKKQEDPFKDIEEKMAVVREPDITALDPDIGMDPEVTIKVENIEVDLDFNDFMSNDYEPAQDDETMPEPEVKLEEQSKDAVILTFENVISDKLRYGEIPSNDENGDGDLTHNHFCKVCHLVFKNPRTLLMHQKRKHKTFRRFFEHICDHCGMSYDAKNSLIAHIRRKHGPDANEDDMKERACDICALVFKGLGRLRMHMRRKHGAYEDSFKHACEDCGLTYEKYASLIVHRRRKHCGAPKQKPQWYTCPFCSKLFSRRETYSRHIQRKHKVDDEDQINPESEKVLKNTVKNEKSGEVTCTFCPLMFSSMMYLKLHMRRKHNVLADDFKLKCKLCNLSYDKVESLKRHVRRKHEPGTYCEVCSKQFPTIEAYLNHSHKKVVKECNMCGLIFATQGGLSKHLRCTHKVPMPNTVFCTICNAGFHEKRQLKPHFMRVHLQMSYPCQFCSKMFKAKESYRRHLMFKHPTNYIEEAKTHQCEKCPEKFVNEFELCKHINTAHRDPQVVIKKEEKDVIPDLFKCTKCPHEYNTWDELKYHFESVHHANEETQCQKCGELLPRNELPKHMKSHEEVEMDCKYCEFKTKSRVSMTQHMLRHKNAATLNCDFHGCRYKTFYEDAMAKHKRRHVDLGVKLQCASCPFQTMNKYILKYHEEAHSTGKKRYSCDQCDYATILPANLVQHKYKHSTIKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00206373; iTF_00207255; iTF_00034090; iTF_00033185; iTF_00044778; iTF_00666772; iTF_00826133; iTF_00827306; iTF_00926908;
- 90% Identity
- -
- 80% Identity
- -