Arep023059.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421248.1:1325101-1328562[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0023 0.18 12.9 5.5 1 23 153 176 153 176 0.95 2 17 0.00027 0.021 15.9 1.6 1 23 185 208 185 208 0.96 3 17 0.0097 0.77 11.0 0.2 3 23 222 243 221 243 0.97 4 17 0.00052 0.041 15.0 0.7 1 23 252 275 252 275 0.96 5 17 0.00024 0.019 16.0 2.2 1 23 286 309 286 309 0.98 6 17 0.0001 0.0082 17.2 0.9 2 23 339 361 338 361 0.97 7 17 0.0012 0.093 13.9 1.5 2 23 371 393 370 393 0.96 8 17 0.51 40 5.6 0.4 2 19 398 415 397 418 0.90 9 17 0.0018 0.14 13.3 1.0 2 21 423 442 422 445 0.94 10 17 0.72 57 5.1 1.5 3 23 455 476 454 476 0.93 11 17 0.0021 0.17 13.1 3.9 1 23 481 504 481 504 0.95 12 17 0.00041 0.033 15.3 1.6 1 23 515 538 515 538 0.98 13 17 0.0063 0.5 11.6 2.6 1 23 557 580 557 581 0.96 14 17 0.012 0.92 10.7 2.3 2 23 613 634 612 634 0.97 15 17 4.1 3.3e+02 2.7 0.7 3 23 642 664 640 664 0.88 16 17 0.03 2.4 9.4 0.1 1 23 700 722 700 722 0.96 17 17 0.083 6.6 8.1 1.9 1 23 728 751 728 751 0.97
Sequence Information
- Coding Sequence
- ATGTCACTCATTCCTGAACCGTTAATCAAGACGGAGAAAGACCAGCGCAAAGACCCCACAACTTACCTGCCTGAAGAAGAAATGTCCTatgaaattaagaaaaagaagaagaagaaaaaaaagaaacaagaagACGACCCATTCAAAGATATAGAACAAAAAATGGGGGTAGTTAGGGATCCGGATATAACCGCTTTGGATCCGGATATAGGGATGGATCCAGAAGTTACCATCAAAGTGGAGAATATAGAAGTTGATTTGGACTTTAATGATtTCGTGGACAACGATTACGAGCCTCACAGCGATGATAACCCCATGGAGCCCGAAATAAAGTTAGAAGAGCAGAACAAAGATGCTATCCTGCTCACCTTCGAAAGCGTAATCAACGACAAAATAATCTATGGAGAAAAAGTTGAACCCAAGACAGAAGACAACGATACCGAAGTAACGCACAACCACTTCTGCAAAGTCTGTCACCTCGTCTTCAAAAACCCTAGAACGTTGCTCATGCATCAAAAAAGGAAGCACAAACGTTTCAGACGATATTTCCAACATATTTGTGACCATTGTGGCATGTCATACGATGCTAAGAACAGCTTGATCGCTCATATACGGAGAAAACACGGTCCCGATTCAAATATTGATGATATGAAGGAACGGGCCTGTGATATTTGTGCTCTGGTTTTCAAAGGACTTGCCAGGTTGAGGATGCATATGCGGAGGAAGCATGGGGCTTATGAGGACTCCTTCACACATGCTTGCGAGGACTGCGGTCTAACCTATGAAAAATATGCAAGTCTGATTGTCCACAGACGGAGGAAACATTGCGGGGCTCCCAAACAGAAAACCCAGTGGTACACTTGCCCGTTTTGCTCCAAGCTCTTTGCTAGAAGGGAAACCTATTCTCGCCATATACAACGTAAGCACAAGGTAAACGAagacgatgaaattaaaaacgaaGAATTGGAACGTGTTATGAAGAATTCTGTTAAGAATGAGAAGTCGGGTGAAGTTACTTGCAGCTATTGTCCTTTAATGTTTTCGTCTATGATGTACCTGAAGCTCCATATGAGAAGGAAACACAACGTTCTAATCAATGACTTTAGATTGAAATGCAAGCTTTGTAATCTGTCCTACGATAAGGTGGAGAGTTTGAAACGCCATGTCAGAAGAAAACATGAACCCGGGACGTATTGTGAAGTGTGCAGCAAACAGTTCCCTTCGATGGAAGCCTACTTGAACCATTCTCATAAGAAGATCATAAAGGAGTGCAACCTGTGTGGGCTCATCTTTGCAACGCAAGGCGGTCTGTCCAAGCATTTGAGGTGTACGCACAAAGTTCCAACGGACAAGACAGTGTTTTGCAGCGTTTGCAATGCTGGGTTTCATGATAAACGGCAGCTGAAACCTCACTTCATGAGGGTACATTTACAAGTGAGCTACACATGTCAGTTCTGCAGTAAAATGTTCAAAGCGAAGGAGAGCTACCGACGGCATCTCATGTTCAAACATTCCGACAGCTACGTCGAAGAAACTAAAACGCATCAGTGTGAGAAATGCCCTGAACTGTTTATCGACGAATTTGAACTCTGCAAGCATATAAATACAGCTCACCGAACCCCAGAAGTTGTTATAAAGAAGGAAGACAAGGACGTAATCAAGGACTTGTTTCGGTGTACGAAATGCACAAACGAATATAATACATGGGAGGAATTAAGGGTCCATTTTGAGACGACACATCACGCGAATGAAGAAACCCAATGTCAGAAATGTGGCGAACTCATGGCCCGAAGTGAATTACCCAAGCACATGAAAAGTCACGAAGAAGCCGAAATGTCGTGCAAATACTGTGAGTTCAAAACTAAAAGCAGAGTGAGTATGACTCAGCATATGCTTCGCCACAAAAACGCGGCGACAATCAACTGTGATTTCAACGGGTGTCGGTACAAAACGTTTTACGAGGACGCCATGGCGAAGCACAAACGTCGCCATGTTGATTTAGGTGTGAAATTACAATGTGCCAGTTGTCCGTTTCAAACTATGAACAAATATATCTTGAAATATCACGAAGAAGCCCATTCTACGGGGAAGAAACGTTACGCTTGTGATCAATGTGACTACGCCACTATTTTACCAGCTAATTTGGTGCAGCATAAATATAAGCATTCGACGGTGAAAAGGTTCAAGTGTGAAGTATGCCCTTTCGCTACAAAATATAATACGTCATTGCGTTTTCATGTAAGGAAAAAACATTGCGATCTTCCAACGTTGAGATAG
- Protein Sequence
- MSLIPEPLIKTEKDQRKDPTTYLPEEEMSYEIKKKKKKKKKKQEDDPFKDIEQKMGVVRDPDITALDPDIGMDPEVTIKVENIEVDLDFNDFVDNDYEPHSDDNPMEPEIKLEEQNKDAILLTFESVINDKIIYGEKVEPKTEDNDTEVTHNHFCKVCHLVFKNPRTLLMHQKRKHKRFRRYFQHICDHCGMSYDAKNSLIAHIRRKHGPDSNIDDMKERACDICALVFKGLARLRMHMRRKHGAYEDSFTHACEDCGLTYEKYASLIVHRRRKHCGAPKQKTQWYTCPFCSKLFARRETYSRHIQRKHKVNEDDEIKNEELERVMKNSVKNEKSGEVTCSYCPLMFSSMMYLKLHMRRKHNVLINDFRLKCKLCNLSYDKVESLKRHVRRKHEPGTYCEVCSKQFPSMEAYLNHSHKKIIKECNLCGLIFATQGGLSKHLRCTHKVPTDKTVFCSVCNAGFHDKRQLKPHFMRVHLQVSYTCQFCSKMFKAKESYRRHLMFKHSDSYVEETKTHQCEKCPELFIDEFELCKHINTAHRTPEVVIKKEDKDVIKDLFRCTKCTNEYNTWEELRVHFETTHHANEETQCQKCGELMARSELPKHMKSHEEAEMSCKYCEFKTKSRVSMTQHMLRHKNAATINCDFNGCRYKTFYEDAMAKHKRRHVDLGVKLQCASCPFQTMNKYILKYHEEAHSTGKKRYACDQCDYATILPANLVQHKYKHSTVKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634786;
- 90% Identity
- iTF_00033185;
- 80% Identity
- -