Edef014906.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990092.1:1566866-1571185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0027 0.24 12.6 5.5 1 23 148 171 148 171 0.95 2 17 0.00026 0.023 15.8 0.5 1 23 180 203 180 203 0.97 3 17 0.0037 0.32 12.2 0.3 3 23 217 238 216 238 0.97 4 17 0.00046 0.041 15.0 0.7 1 23 247 270 247 270 0.96 5 17 0.00013 0.012 16.7 3.0 1 23 281 304 281 304 0.98 6 17 9.2e-05 0.0081 17.2 0.9 2 23 333 355 332 355 0.97 7 17 0.001 0.091 13.9 1.5 2 23 365 387 364 387 0.96 8 17 0.2 18 6.7 0.5 3 19 393 409 391 412 0.92 9 17 0.0016 0.14 13.3 1.0 2 21 417 436 416 439 0.94 10 17 2 1.8e+02 3.5 1.5 3 23 449 470 448 470 0.92 11 17 0.018 1.6 10.0 3.8 1 23 475 498 475 498 0.95 12 17 0.00036 0.032 15.3 1.6 1 23 509 532 509 532 0.98 13 17 0.0036 0.32 12.2 2.5 1 23 552 575 552 576 0.94 14 17 0.0067 0.59 11.3 1.6 3 23 609 629 607 629 0.97 15 17 8.6 7.5e+02 1.6 1.0 4 23 638 659 636 659 0.84 16 17 0.065 5.7 8.2 0.1 1 23 695 717 695 717 0.96 17 17 0.073 6.5 8.1 1.9 1 23 723 746 723 746 0.97
Sequence Information
- Coding Sequence
- ATGTCACTCATAACCGAACCGTTAATAAAGAAAGACAAAGATGAGCGCAAAGACCCAACAACTTTCCTCCCTGAAGAGGAAATGTGTTATGAAATCAAGAGAAAGAAGAAAAAGAAAAAGAAGAAGCAAGAAGATCCGTTCAAAGATATAGAACTGAAAATGGGGATAGTTAGGGAACCAGATATAACAGCTTTGGATCCAGATATAGGGATGGATCCGGAAGTTACAATCAAAGTGGAGAACATTGAAGTTGATCTGGATTTCAATGACTTTCTGGACAACGATTACGAGCCACAGCAGAACGAGGAAACCCCCCCAGAGTCAGAAGTAAAACTCGAGGAGCAGAGCAAAGACGCTGTCTTACTGACATTTGAAACCGTTATCAACGACAAAGCAAAACACGGGGACGAAACGAAACCTCCAAACGACACAGAAGGAAGACATTTCTGCAAAGTCTGCCACCTCGTCTTCAAAAGCCCTAGAACGTTGCTAATGCATCAGAAAAGGAAGCACAAGCGCTTCAGAAGATACTTCGAATACATCTGTGATCACTGCGGTATGTCTTACGATGCTAAGAACAGCTTGGCCGCTCATGTCCGGAGGAAACATGGCCCGGGGTCCAACGAGGACGATATGAAGGAACGAGCTTGTGATATATGTGCTTTAGTGTTTAAAGGACGGGCTAGATTGAGAATGCATATGCGCAGGAAGCATGGTTCTTATGCGGACTCGTTTAAACACGCTTGCGAGGACTGTGGTCTTACGTATGAAAAATATGCCAGTTTAATAGTACATAGGAGACGGAAACATTGCGGTGTTCCTAAACAAAAAGCTCAGTGGTATACGTGTCCCTTCTGCTCTAAGCTGTTTTCTAGAAGGGAGACTTACTCTCGTCATATACAACGCAAACACAAAGTGAAGGAAGACGAAGAGAAGAATTCTGAGTCGGACCAGGTTTTAAAGAACACAGTCAAAAACGAGAAGTCCGGTGAAGTCACTTGCAGTTATTGCCCGTTGATGTTCTCTTCTATGATGTACTTAAAATTGCACATGAGACGGAAACATAACGTTCTGACCGATGATTTTAGATTGAAATGCAAACTCTGTAACCTATCGTACGATAAGGTTGAGAGTTTGAAACGTCATGTTAGAAGGAAACATGAGCCGGGAACGTTTTGTGAGGTTTGCAGCAAGCAGTTTCCTTCACTGGAAGCGTACATGAATCACTCTCATAAGAAAGTCATTAAAGAGTGTAACTTGTGTGGGCTGATCTTCGCTACGCAAGGGGGGCTGTCAAAACATTTGAGGTGTACGCACAAAGTTCCAATGGACAAGACAGTTTTCTGTAGCATTTGTAATGCAGGTTTTCATGAAAAACGTCAGCTGAAACCCCACTTCATGAGAGTACATCTACAAGTGAGCTATACATGTCAGTTTTGCAGCAAATTGTTTAAAGCCAAAGAGAGTTACAGGCGGCATCTCATGTTCAAACATCCAGACAGCTATATCGAGGAAACTAAATCCCATCAGTGTGAAAAGTGTCCGGAACTGTTTATCGATGAATTTGAACTCTGCAAACATATAAATACGGCTCACCGGGAAAACCCAGAGGTTATAGTTAAAAGAGAAGACAAAGACGTAATCAAAGATTTGTTTAAGTGCACAAAATGCACCAACGAGTACACGACATGGGAGGAACTTAGAGTGCATTTCGAATCAAATCACCACGCAAACGAAGTAACTCAGTGTCAAAAATGTGGGGAACTCATGCCGAGAAGCGAACTACCCAAACACATAAAAATACACGAAGAAGTCGAAATGGCTTGTAAATATTGCGAGTTTAAAACTAAAAATAGAGTGAGCATGACCCAGCACATGTTGAGACACAAAAATGCAGCGACCATCAACTGCGGGTTCAACGGATGTAGATATAAAACGTTTTATGAAGACGCTATGGAGAAACATAAAAAGAGACATCTCGATTTAGGTGTTAAGTTACAATGTGCCAGTTGTCCATTTCAGACGATGAATAAATATATTTTGAAGTACCACGAGGAAGCCCATTCTACGGGGAAGAAACGTTATGCTTGCAATCAGTGTGAGTACGCTACCATACTGCCAGCTAACTTGGTGCAGCACAAGTACAAACATTCCACGGAGAAGAGGTTCAAGTGTGAAGTGTGTCCGTTCGCTACAAAGTACAATACTTCTTTACGGTTTCACGTGAGAAAGAAACACTGTGATCTCCCAACTTTGAGGTAG
- Protein Sequence
- MSLITEPLIKKDKDERKDPTTFLPEEEMCYEIKRKKKKKKKKQEDPFKDIELKMGIVREPDITALDPDIGMDPEVTIKVENIEVDLDFNDFLDNDYEPQQNEETPPESEVKLEEQSKDAVLLTFETVINDKAKHGDETKPPNDTEGRHFCKVCHLVFKSPRTLLMHQKRKHKRFRRYFEYICDHCGMSYDAKNSLAAHVRRKHGPGSNEDDMKERACDICALVFKGRARLRMHMRRKHGSYADSFKHACEDCGLTYEKYASLIVHRRRKHCGVPKQKAQWYTCPFCSKLFSRRETYSRHIQRKHKVKEDEEKNSESDQVLKNTVKNEKSGEVTCSYCPLMFSSMMYLKLHMRRKHNVLTDDFRLKCKLCNLSYDKVESLKRHVRRKHEPGTFCEVCSKQFPSLEAYMNHSHKKVIKECNLCGLIFATQGGLSKHLRCTHKVPMDKTVFCSICNAGFHEKRQLKPHFMRVHLQVSYTCQFCSKLFKAKESYRRHLMFKHPDSYIEETKSHQCEKCPELFIDEFELCKHINTAHRENPEVIVKREDKDVIKDLFKCTKCTNEYTTWEELRVHFESNHHANEVTQCQKCGELMPRSELPKHIKIHEEVEMACKYCEFKTKNRVSMTQHMLRHKNAATINCGFNGCRYKTFYEDAMEKHKKRHLDLGVKLQCASCPFQTMNKYILKYHEEAHSTGKKRYACNQCEYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634786;
- 90% Identity
- -
- 80% Identity
- -