Bstr016711.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- -
- Assembly
- GCA_950106695.1
- Location
- OX467115.1:7213169-7216934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0022 0.16 12.9 5.5 1 23 152 175 152 175 0.95 2 17 0.00044 0.032 15.2 1.5 1 23 184 207 184 207 0.96 3 17 0.0027 0.19 12.7 0.3 3 23 221 242 220 242 0.97 4 17 0.0005 0.036 15.0 0.7 1 23 251 274 251 274 0.96 5 17 0.00014 0.01 16.7 3.0 1 23 285 308 285 308 0.98 6 17 0.00012 0.0084 17.0 0.7 2 23 338 360 337 360 0.97 7 17 0.0011 0.082 13.9 1.5 2 23 370 392 369 392 0.96 8 17 0.11 7.8 7.6 0.4 2 20 397 415 396 417 0.91 9 17 0.0017 0.12 13.3 1.0 2 21 422 441 421 444 0.94 10 17 0.38 28 5.9 1.5 3 23 454 475 453 475 0.93 11 17 0.002 0.15 13.1 3.9 1 23 480 503 480 503 0.95 12 17 0.00044 0.032 15.2 1.8 1 23 514 537 514 537 0.98 13 17 0.12 8.7 7.5 1.8 1 23 557 580 557 581 0.94 14 17 0.078 5.7 8.1 2.8 2 23 613 634 612 634 0.97 15 17 3.9 2.9e+02 2.7 0.7 3 23 642 664 640 664 0.88 16 17 0.029 2.1 9.4 0.1 1 23 700 722 700 722 0.96 17 17 0.079 5.8 8.1 1.9 1 23 728 751 728 751 0.97
Sequence Information
- Coding Sequence
- ATGTCACTCATACCTGAACCGTTGATAAAGAAAGAGAAAGATGAACGCAAAGACCCAACAACTTTTCTTCCCGAAGAAGAAATGTCTTatgaaatcaagaaaaaaaagaaaaagaaaaaaaagaagcagGAAGatccttttaaggatatagaAGAGAAATTAAAAGTAGTTAGAGAACCAGATATAACTGCTTTGGATCCAGATATAGGGATGGATCCGGAAGTCACTATCAAAGTGGAGAATATTGAGGTGGACCTGGATTTTAATGATTTTTTGGACAACGATTATGAGCCTCAACAGGATGAGGAAGTTTCTCCAGAACCAGAAGTAAAATTAGAGGAGCAAAGCAAAGATGCAGTGTTGCTAACTTTCGAAACCGTCATTAATGACAAGGTTATTTATGGCGAGGACATCAAACCTAGCAAAGATGGTGATACGGAGGTCACACATAACCATTTTTGCAAAGTCTGCCATCTAGTCTTCAAAAACCCCAGAACGCTGCTAATGCATCAGAAGAGAAAGCACAAGCGCTTCAGACGATACTTCCAACACATCTGTGATCATTGCGGGATGTCATATGATGCCAAGAATAGCTTGGTTGCTCATATCCGGAGAAAACATGGCCCGGGAtccaatgatgatgatatgaaagAACGTGCTTGTGATATATGTGCTTTAGTGTTTAAAGGACTATCTAGGTTGAGGATGCATATGCGGAGAAAGCATGGCGCATATGCGGAATCATTCAAACATGCCTGTGAAGATTGTGGTCTTACATACGAAAAATATGCTAGTTTAATAGTACACAGGAGAAGAAAGCACTGTGGCATTCCTAAACAAAAAACTCAGTGGTACACTTGTCCTTTCTGCTCTAAGCTGTTTTCTAGGAGGGAGACATATTCACGCCATATTCAACGGAAACACAAAGTCAATGAAGATGATGATATTAAAAATTCTGAGTCAGATCAAGTTTTGAAGAATACAGTGAAAAATGAAAAGTCTGGTGAAGTCACATGCAGTTATTGTCCGCTGATGTTTTCTTCGATAATGTATTTGAAACTGCATATGAGACGGAAGCATAATGTACTAACAGATGACTTCAGATTGAAATGCAAGCTTTGCAACTTATCATATGATAAGGTTGAGAGTTTAAAACGTCATGTGAGAAGGAAACATGAACCGGGAACATATTGTGAAGTTTGCAGCAAGCAGTTTCCATCACTGGAAGCGTATGTGAATCACActcataaaaaagtcattaaaGAGTGTAACTTGTGTGGACTTATCTTTGCTACGCAAGGAGGGTTATCCAAGCATTTGAGATGTACACACAAAGTCCCAACGGACAACACAGTTTTCTGTAGCATCTGTAATGCAGGATTCCATGATAAACGTCAGCTGAAACCTCACTTCATGAGGGTACATTTACAAGTGAGCTACACATGCCAGTTTTGCAGCAAAATGTTTAAAGCCAAAGAGAGTTACAGACGGCATCTAATGTTCAAACATCCGGACAGCTACATCGAAGAAACTAAAACACACCAGTGTGAAAAATGTCCCGAGTTGTTTATAGACGAATTTGAACTTTGCAAACATATAAATACAGTTCACAGAGAAAACCCAGAGGTTATTGTTAAAAGAGAAGACAAAGACGTTATCAAAGATTTGTTCAAGTGTACGAAATGTATCAACGAATACACAACATGGGAGGAACTTAGAGTTCATTTTGAAATGACTCACCATGCTAATGAAGAAACTCAGTGCCAAAAATGTGGGGAACTTATGCCGAGAAGTGAACTACCCAAGCATATAAAAATCCACGAAGAAGTCGAAATGACCTGTAAATACTGCGAGTTTAAGACTAAAAGTAGGGTGAGCATGACGCAACACACACTGAGACACAAAAACGCAGAGACCATAAATTGTGATTTCAATGGATGtagatataaaactttttatgaaGACGCTATGGCGAAACATAAGAGACGTCATGTTGACTTAGGTGTTAAGCTACAATGTGCAAGTTGTCCGTTCCAGACAATGAACAAGTATATATTGAAATACCATGAAGAAGCTCATTCAACAGGCAAGAAACGATATGCTTGTGACCAGTGTGACTATGCTACTATTCTACCGGCTAATCTGGTGCAACATAAGTACAAACATTCTGCGGTCAAACGGTTTAAGTGTGAAGTGTGTCCATTCGCTACAAAGTACAATACTTCCCTTCGCTTTCACGTCAGAAAGAAACATTGTGATCTTCCGACTTTGAGGTAG
- Protein Sequence
- MSLIPEPLIKKEKDERKDPTTFLPEEEMSYEIKKKKKKKKKKQEDPFKDIEEKLKVVREPDITALDPDIGMDPEVTIKVENIEVDLDFNDFLDNDYEPQQDEEVSPEPEVKLEEQSKDAVLLTFETVINDKVIYGEDIKPSKDGDTEVTHNHFCKVCHLVFKNPRTLLMHQKRKHKRFRRYFQHICDHCGMSYDAKNSLVAHIRRKHGPGSNDDDMKERACDICALVFKGLSRLRMHMRRKHGAYAESFKHACEDCGLTYEKYASLIVHRRRKHCGIPKQKTQWYTCPFCSKLFSRRETYSRHIQRKHKVNEDDDIKNSESDQVLKNTVKNEKSGEVTCSYCPLMFSSIMYLKLHMRRKHNVLTDDFRLKCKLCNLSYDKVESLKRHVRRKHEPGTYCEVCSKQFPSLEAYVNHTHKKVIKECNLCGLIFATQGGLSKHLRCTHKVPTDNTVFCSICNAGFHDKRQLKPHFMRVHLQVSYTCQFCSKMFKAKESYRRHLMFKHPDSYIEETKTHQCEKCPELFIDEFELCKHINTVHRENPEVIVKREDKDVIKDLFKCTKCINEYTTWEELRVHFEMTHHANEETQCQKCGELMPRSELPKHIKIHEEVEMTCKYCEFKTKSRVSMTQHTLRHKNAETINCDFNGCRYKTFYEDAMAKHKRRHVDLGVKLQCASCPFQTMNKYILKYHEEAHSTGKKRYACDQCDYATILPANLVQHKYKHSAVKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634786;
- 90% Identity
- iTF_00206373;
- 80% Identity
- -