Amar013125.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- -
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000120.1:1159728-1163083[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0014 0.083 13.7 5.6 1 23 152 175 152 175 0.95 2 17 0.00015 0.0091 16.7 1.9 1 23 184 207 184 207 0.96 3 17 0.0044 0.26 12.2 0.3 3 23 221 242 220 242 0.97 4 17 0.00056 0.033 15.0 0.7 1 23 251 274 251 274 0.96 5 17 0.00026 0.015 16.0 2.2 1 23 285 308 285 308 0.98 6 17 0.0013 0.08 13.8 0.5 2 23 338 360 337 360 0.96 7 17 0.0013 0.074 13.9 1.5 2 23 370 392 369 392 0.96 8 17 0.25 15 6.6 0.5 2 19 397 414 396 417 0.91 9 17 0.0019 0.11 13.3 1.0 2 21 422 441 421 444 0.94 10 17 2.5 1.5e+02 3.5 1.5 3 23 454 475 453 475 0.92 11 17 0.0023 0.14 13.1 3.9 1 23 480 503 480 503 0.95 12 17 0.00049 0.029 15.2 1.8 1 23 514 537 514 537 0.98 13 17 0.0096 0.57 11.1 2.0 1 23 556 579 556 580 0.94 14 17 0.01 0.6 11.0 2.5 2 23 612 633 611 633 0.97 15 17 5.4 3.2e+02 2.4 0.8 3 23 641 663 640 663 0.87 16 17 0.01 0.62 11.0 0.2 1 23 699 721 699 721 0.97 17 17 0.089 5.3 8.1 1.9 1 23 727 750 727 750 0.97
Sequence Information
- Coding Sequence
- ATGTCTCTCATCCCCGAACCATTAATAAAGAAAGAAAAAGATAAGCGGAAAGATCCGACAACCTTCCTTCCAGAAGAAGAGATGTCTTACGAAATCAAGAAAAAGAAGAAAAAGAAAAAGAAGAAACAAGAAGACCCTTTCAAAGATATAGAACAGAAAATGGCGATAGTTAGAGAACCTGATATAACTGCTTTAGATCCGGATATAGGGATGGATCCAGAAGTTACCATCAAAGTGGAGAACATTGAAGTAGATCTGGATTTTAATGATTTCCTGGACCACGACTACGAGCCGCACCACAGTGATGATAACCCGGAGCCGGAAGTAAAACTCGAGGACCAGAATAAAGATGCCGTCTTACTCACCTTCGAAAGCGTTGTCAACAACAAACTCAAGTACGAGGAAGATATTAAACCCAAAACTGAAGATGGAGACACTGAGGTGACACACAATCACTTCTGCAAAATCTGCCATCTCGTCTTCAAGAACCCTAGAACGCTGCTGATGCATCAAAAGAGAAAGCACAAACGGTTCAGACGATATTTCCAACATATCTGTGACCATTGTGGCATGTCTTACGATGCTAAGAACAGCTTGATTGCTCATATGCGGAGAAAACATGGCCCCGATGCAAACGCCGATGATATGAAAGAGCGGGCTTGTGATATTTGTGCTTTAGTGTTCAAAGGACGGGCCAGGTTGAGAATGCATATGCGGAGGAAACACGGGGCCTATGAGGACTCCTTCAAACACGCTTGCGAAGACTGCGGTCTTACTTACGAAAAGTATGCGAGTTTGATAGTTCACAGAAGAAGAAAGCACTGCGGCATCACCAAACAGAAAACACAATGGTACACTTGTCCGTTCTGTTCCAAACTATTCGCAAGAAGGGAGACGTACTCCCGACATATTCAACGGAAGCATAAAGTGAATGAAGATGAAGAAGAGAAAAATCCAGAGGCAGAACGAGTGTTAATGAACACTGTCAAAAATGAAAAGTCTGGAGAGATCACATGCAGCTTCTGTCCACTTATGTTCGCTTCTATTATGTACTTAAAGCTCCATATGAGGAGAAAGCATAACGTCTTAACCGATGACTTTAGATTAAAATGCAAGCTCTGTAATTTATCATACGATAAAGTGGAGAGTTTAAAACGGCACGTACGAAGGAAACACGAACCGGGTACTTACTGCGAAGTTTGCAGCAAACAGTTTCCATCCTTGGAGGCGTACTTAAATCATTCTCATAAGAAAGTCATTAAGGAGTGTAACTTGTGCGGACTTATTTTTGCTACGCAAGGAGGCCTATCGAAGCATTTGAGGTGTACGCACAAAGTCCCAACGGATAAGACTGTGTTTTGCAGCATTTGTAATGCAGGCTTTCACGAAAAACGTCAATTGAAGCCTCATTTCATGCGGGTTCACTTACAAGTGAGCTACACTTGTCAGTTTTGCAGCAAAATGTTCAAAGCAAAGGAGAGTTACAGACGGCATCTCATGTTCAAACATCCAGACAGCTACATCGAGGAAACGAAAACGCACCAATGTGAAAAGTGCCCGGAGTTGTTTATAGACGAATTTGAACTCTGCAAGCATATAAATACAGTCCATAGAGAAGACACAGTCATCATTAAAAAAGAAGATAAAGACGTTATCAAAGATTTGTTCCGTTGCACAAAATGCACTAACGAGTACAATACATGGGAGGAACTGAGGGTTCACTTTGAATCCCTCCATCATGCCAACGAAGAGACTCAATGTCAAAAATGTGGCGAACTTATGCCGAGGAGTGAACTACCAAAACACATAAAAATACACGAAGAAGTCGATATGACTTGTAAATACTGCGAGTTTAAAACTAAAAGTAGGGTGAGCATGACTCAGCATATGCTGAGACACACAAATGCAACCACAATCGACTGTGACTTCAACGGATGTCGATATAAGACGTTCTACGAAGATGCCATGGCGAAGCATAAGAGACGTCATGTTGATTTAGGTGTTAAGTTACAATGTGCCAGCTGTCCATTCCAAACTATGAACAAATATATCTTACGATACCACGAAGAAGCCCATTCGACTGGTAAAAAACGTTATACCTGCGACCAATGTGACTATGCCACGATATTGCCAGCAAATTTAGTACAGCATAAGTATAAGCATTCCTCGGTGAAAAGGTTCAAATGTGAAGTGTGTCCGTTCGCTACTAAATACAATACGTCTCTGCGCTTTCATGTCAGAAAGAAACATTGTGATCTACCCACTTCGACGTAG
- Protein Sequence
- MSLIPEPLIKKEKDKRKDPTTFLPEEEMSYEIKKKKKKKKKKQEDPFKDIEQKMAIVREPDITALDPDIGMDPEVTIKVENIEVDLDFNDFLDHDYEPHHSDDNPEPEVKLEDQNKDAVLLTFESVVNNKLKYEEDIKPKTEDGDTEVTHNHFCKICHLVFKNPRTLLMHQKRKHKRFRRYFQHICDHCGMSYDAKNSLIAHMRRKHGPDANADDMKERACDICALVFKGRARLRMHMRRKHGAYEDSFKHACEDCGLTYEKYASLIVHRRRKHCGITKQKTQWYTCPFCSKLFARRETYSRHIQRKHKVNEDEEEKNPEAERVLMNTVKNEKSGEITCSFCPLMFASIMYLKLHMRRKHNVLTDDFRLKCKLCNLSYDKVESLKRHVRRKHEPGTYCEVCSKQFPSLEAYLNHSHKKVIKECNLCGLIFATQGGLSKHLRCTHKVPTDKTVFCSICNAGFHEKRQLKPHFMRVHLQVSYTCQFCSKMFKAKESYRRHLMFKHPDSYIEETKTHQCEKCPELFIDEFELCKHINTVHREDTVIIKKEDKDVIKDLFRCTKCTNEYNTWEELRVHFESLHHANEETQCQKCGELMPRSELPKHIKIHEEVDMTCKYCEFKTKSRVSMTQHMLRHTNATTIDCDFNGCRYKTFYEDAMAKHKRRHVDLGVKLQCASCPFQTMNKYILRYHEEAHSTGKKRYTCDQCDYATILPANLVQHKYKHSSVKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634786;
- 90% Identity
- iTF_00033185;
- 80% Identity
- -