Aleu023801.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421287.1:8844162-8847876[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0014 0.1 13.7 5.6 1 23 151 174 151 174 0.95 2 17 0.00017 0.012 16.7 1.5 1 23 183 206 183 206 0.97 3 17 0.0045 0.33 12.2 0.3 3 23 220 241 219 241 0.97 4 17 0.00056 0.041 15.0 0.7 1 23 250 273 250 273 0.96 5 17 0.00026 0.019 16.0 2.2 1 23 284 307 284 307 0.98 6 17 0.00023 0.017 16.2 0.6 2 23 337 359 336 359 0.97 7 17 0.0013 0.092 13.9 1.5 2 23 369 391 368 391 0.96 8 17 0.25 18 6.6 0.5 2 19 396 413 395 416 0.91 9 17 0.0019 0.14 13.3 1.0 2 21 421 440 420 443 0.94 10 17 2.2 1.6e+02 3.7 1.6 3 23 453 474 452 474 0.92 11 17 0.00046 0.034 15.3 3.8 1 23 479 502 479 502 0.95 12 17 0.00049 0.036 15.2 1.8 1 23 513 536 513 536 0.98 13 17 0.0097 0.71 11.1 2.0 1 23 555 578 555 579 0.94 14 17 0.0079 0.58 11.4 2.6 2 23 611 632 610 632 0.97 15 17 5.5 4e+02 2.4 0.8 3 23 640 662 639 662 0.87 16 17 0.033 2.4 9.4 0.1 1 23 698 720 698 720 0.96 17 17 0.089 6.5 8.1 1.9 1 23 726 749 726 749 0.97
Sequence Information
- Coding Sequence
- ATGTCTCTCATCCCTGAACAATTaattaagaaagaaaaagacaagCGGAAAGATCCAACGACCTTCCTTCCCGAAGAAGAAATGTCTTACGAAatcaagaaaaagaagaaaaagaaaaaaaagaagcaAGTAGACCCTTTCAAAGATATAGAAGAGAAAATGGCGGTAGTTAGAGAACCGGATATAACTGCTTTAGATCCGGATATAGGGATGGATCCGGAAGTTACCATCAAAGTGGAGAACATTGAAGTAGACCTGGATTTTAATGATTTCCTGCATAACGACTATGAGCCGCACCACAGTGATGATATCCTAGAGCCGGAAGTAAAACTCGACGAGCAGAGTAAAGATGCCGTCTTACTCACTTTCGAAAGCGTTGTCAACAACAAACTCATTCACGAGGACATCAAACCCAAGACTGAAGATGGTGACACTGAAGTGACACACAATCACTTCTGCAAGATCTGCCATCTCGTCTTCAAGAACCCTAGAACACTGCTGATGCATCAGAAGAGAAAACACAAACGGTTCAGACGATATTTCCAACATGTTTGTGACCATTGTGGCATGTCTTACGATGCCAAGAACAGCTTGATTGCTCATATACGGAGAAAGCATGGTCCAGATGCAAACGCAGATGATATGAAAGAACGGGCTTGTGATATTTGTGCTCTAGTGTTCAAAGGACGGGCCAGATTGAGGATGCATATGCGGAGGAAACACGGGGCCTACGAGGATTCTTTCAAACATGCTTGCGAAGACTGCGGTCTTACTTATGAGAAGTATGCAAGTTTGATAGTTCACAGAAGAAGAAAGCACTGTGGCATCACTAAACAGAAAACACAATGGTACACTTGCCCATTCTGTTCCAAGCTATTTGCAAGAAGAGAGACGTACTCTAGACACATTCAACGGAAGCATAAAGTGAATGAAGACGATGAAGAACAAAATCCAGAGGCACAACGAGTCTTACAGAACACCGTCAAAAATGAAAAGTCTGGAGAGATCACGTGCAGCTATTGTCCACTGATGTTCGCCTCAATGATGTACTTAAAGCTCCATATGAGGAGAAAGCATAACGTCTTAACCGATGACTTTAGATTAAAATGCAAGCTTTGCAATTTATCGTACGATAAAGTGGAGAGTTTAAAACGGCATGTACGAAGGAAACATGAACCTGGTACCTACTGCGAAGTTTGCAGCAAACAGTTTCCATCCTTGGAGGCGTATTTAAATCATTCTCATAAGAAAGTCATTAAGGAGTGTAATTTGTGTGGACTTATTTTCGCGACGCAAGGAGGCCTGTCGAAGCATTTGAGGTGTACGCACAAAGTCCCAACGGATAAGACGGTGTTTTGCACCATTTGCAATGCAGGCTTCCACGAAAAACGTCAATTGAAGCCTCATTTCATGCGGGTTCATTTGCAAGTGAGCTACACGTGTCAGTATTGCAGTAAAATGTTCAAAGCAAAGGAAAGTTACAGACGGCATCTCATGTTCAAACACCCAGACAGCTACACCGAAGAAACTAAAACGCACCAATGTGAAAAGTGCCCGGAGCTGTTTATAGATGAATTTGAACTCTGCAAGCATATAAATACAGTCCATCGAGACGACACAGTCATCATTAAAAAAGAAGATAAAGAAGTTATCAAAGATTTGTTCCGTTGCACAAAATGTACTAATGAGTACAATACGTGGGAGGAACTGAGAGTGCACTTTGAATCTCTCCATCATGCCAACGAAGAGACACAATGCCAAAAATGTGGAGAGCTTATGCCGAGGAGCGAACTACCAAAACATATAAAATTGCACGAAGAAATTGAAATGACGTGTAAATACTGTgagtttaaaactaaaaatagagTGAGCATGACTCAGCATATGCTGAGACACACAAATGCAACGACAATCGACTGCGACTTTAACGGATGTCGATATAAGACGTTCTACGAAGATGCCATGGCGAAGCATAAGAGACGTCATGTTGATTTAGGAGTTAAGCTACAATGTGCCAGCTGTCCATTCCAAACTATGAACAAATATATCTTACGATATCACGAAGAAGCCCATTCGACTGGTAAAAAACGTTATGCCTGCGATCAGTGTGATTATGCCACAATACTACCAGCTAATTTAGTGCAGCATAAGTATAAGCATTCCACGGTGAAAAGGTTCAAATGTGAAGTTTGCCCGTTCGCTACTAAGTACAATACGTCTCTCCGCTTTCATGTTAGAAAGAAACATTGTGATCTTCCCACTTTGAGGTAG
- Protein Sequence
- MSLIPEQLIKKEKDKRKDPTTFLPEEEMSYEIKKKKKKKKKKQVDPFKDIEEKMAVVREPDITALDPDIGMDPEVTIKVENIEVDLDFNDFLHNDYEPHHSDDILEPEVKLDEQSKDAVLLTFESVVNNKLIHEDIKPKTEDGDTEVTHNHFCKICHLVFKNPRTLLMHQKRKHKRFRRYFQHVCDHCGMSYDAKNSLIAHIRRKHGPDANADDMKERACDICALVFKGRARLRMHMRRKHGAYEDSFKHACEDCGLTYEKYASLIVHRRRKHCGITKQKTQWYTCPFCSKLFARRETYSRHIQRKHKVNEDDEEQNPEAQRVLQNTVKNEKSGEITCSYCPLMFASMMYLKLHMRRKHNVLTDDFRLKCKLCNLSYDKVESLKRHVRRKHEPGTYCEVCSKQFPSLEAYLNHSHKKVIKECNLCGLIFATQGGLSKHLRCTHKVPTDKTVFCTICNAGFHEKRQLKPHFMRVHLQVSYTCQYCSKMFKAKESYRRHLMFKHPDSYTEETKTHQCEKCPELFIDEFELCKHINTVHRDDTVIIKKEDKEVIKDLFRCTKCTNEYNTWEELRVHFESLHHANEETQCQKCGELMPRSELPKHIKLHEEIEMTCKYCEFKTKNRVSMTQHMLRHTNATTIDCDFNGCRYKTFYEDAMAKHKRRHVDLGVKLQCASCPFQTMNKYILRYHEEAHSTGKKRYACDQCDYATILPANLVQHKYKHSTVKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634786;
- 90% Identity
- iTF_00034090; iTF_00044778;
- 80% Identity
- -