Dani026931.1
Basic Information
- Insect
- Dryomyza anilis
- Gene Symbol
- Aef1
- Assembly
- GCA_951804985.1
- Location
- OX638134.1:57020380-57023851[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0062 1.1e+02 4.0 0.2 21 46 180 205 162 208 0.87 2 4 3.3e-05 0.6 11.3 0.0 21 50 208 237 205 239 0.87 3 4 0.00036 6.6 7.9 0.0 21 51 236 266 232 267 0.88 4 4 0.00011 2 9.6 0.1 21 47 264 290 262 295 0.89
Sequence Information
- Coding Sequence
- ATGCATATTAAAAACCTGCAGCATGCACATGCTGCCGCAGCTATGGCGAACTGCGAAATTGTCATTGTATCCGCTTCGCCTAATAATGCCAATGAAGGTGGTGGTGGTGGCAGTAGTGCGGCAGCTAATgcccaacaacagcagcaacaacagcaacagcagcaacaacaacagcaacaacaacagcaacaacagcagcaacaacaacagcagcagcagcaacaacagcagcagcaaccacATCAGCAACAACATACAACAGAAATTCAATTGCCCTTTAATGTACATCTGACTGCTGCCAGTGCTGAGGCACACGCAGCCGCACAGGCTGCCGCAATGGCAGCGGCTCAAGCAGCTGCCGCGCATGCTGCTGCCGCGGAGGCGCATCAACATCCGGCCCATCATCATGCGGCCATGTTGCAACAACATCCGTTGGCGCATCTGGTGGCCACGGCCAGCACTAGTCCGGCCCTGTCCGAGGAGCAGCACTACATTGGCGGCGAGCGCAATGGGCATCATAGCGGCGCCACCGCCGGACCCGAGAAACCGTTCCAGTGCAATGTGTGCGAGCGGCGGTTTCGCCAGCTGAGCACATTGACCAATCACGTCAAGATACACACCGGCGAGAAGCCATACAAATGCAACATTTGTGATAAGCAATTCCGCCAGTCGTCCACGCTCACCAACCACATGAAGATTCACACCGGCGAAAAGCCCTTCACGTGCACCTACTGCCCGAAAAACTTTCGACAGTTGAGCACATTGACGAATCACTTGAAGATTCATACAGGTGAAAAACCCTTCGAATGCGCCGTCTGCAAGAAGCAATTCCGCCAGTCCAGCACGCTCAACAATCACATAAAGATACACGTGATGGACAAGGTCTATTTGCCCATGAAAATCAAAACGGAGGAGGATGAAGGGTGA
- Protein Sequence
- MHIKNLQHAHAAAAMANCEIVIVSASPNNANEGGGGGSSAAANAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPHQQQHTTEIQLPFNVHLTAASAEAHAAAQAAAMAAAQAAAAHAAAAEAHQHPAHHHAAMLQQHPLAHLVATASTSPALSEEQHYIGGERNGHHSGATAGPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNICDKQFRQSSTLTNHMKIHTGEKPFTCTYCPKNFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYLPMKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00624995; iTF_00366723; iTF_01023303; iTF_00366888; iTF_01023508; iTF_00258287; iTF_00972559; iTF_01486808; iTF_01486585; iTF_00258528; iTF_01427002; iTF_01427138; iTF_01201116; iTF_01201266; iTF_01181401; iTF_01181574; iTF_01415293; iTF_01415484;
- 90% Identity
- iTF_00624995;
- 80% Identity
- iTF_00624995;