Pcor031708.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- Aef1
- Assembly
- GCA_943735905.1
- Location
- CALSEP010001646.1:34963-35963[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0057 81 4.7 0.1 21 48 181 208 167 212 0.85 2 4 6e-05 0.85 11.0 0.0 21 46 209 234 207 236 0.91 3 4 0.00038 5.5 8.4 0.0 21 51 237 267 235 268 0.88 4 4 0.00015 2.1 9.7 0.1 21 47 265 291 261 296 0.89
Sequence Information
- Coding Sequence
- ATGCATATAAAAAGTTtgcaacatgcgcacgctgcagctgccatggctaattgtgaaatagtcattgttgctgcttcacccaataatgccaatgatgctaatGCAgctgctgccgccgccgctgccgccaatgcacaacagcaacaacaacaacaacaacagcaacaacaacagcagcaacagcaacaacaacaacaacagcagcaacaacaacagcaacaacaacaacaacagcagcaacaacaacagcagcagcaacaacaacaaactcatacaactgaaattcagctacctttcaacgtccatctgaccgctgccagcgctgaagctcacgccgccgctcaagctgccgccatggctgcggctcaggcagcagctcaagcagctgccgctgctgaagcccaccaacagcatccaggtcatcatcatgccatgttgcaacaacatccattggcgcatcttgtggctacggctagcactagtccggctctgtcCGAAGATCACTATGGTGGTGATCGTAATGGTCATGTGGCGGGCGGCCCGGAGAAACCCTTCCAATGCAATGTGTGCGAACGACGATTTCGTCAGCTTAGCACACTGACCAATCATGTCAAAATACACACCGGCGAGAAACCGTACAAATGCAACATTTGTGATAAAACATTTCGTCAATCGTCCACGCTAACCAATCACATGAAGATTCACACCGGTGAGAAACCGTTTACGTGCACCTTCTGTCCGAAGAACTTTCGTCAGCTGAGCACGCTGACAAATCATTTGAAAATTCATACAGGTGAAAAACCCTTCGAATGTGCCGTCTGTAAAAAACAATTCCGCCAGTCTAGCACGCTGAACAATCACATAAAGATTCATGTGATGGACAAGGTCTACTTGCCCATGAAAATAAAAACTGAGGAAGATGAGGGGTGA
- Protein Sequence
- MHIKSLQHAHAAAAMANCEIVIVAASPNNANDANAAAAAAAAANAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTHTTEIQLPFNVHLTAASAEAHAAAQAAAMAAAQAAAQAAAAAEAHQQHPGHHHAMLQQHPLAHLVATASTSPALSEDHYGGDRNGHVAGGPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNICDKTFRQSSTLTNHMKIHTGEKPFTCTFCPKNFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYLPMKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00625175;
- 90% Identity
- iTF_01181401;
- 80% Identity
- iTF_01181401;