Tfer042377.1
Basic Information
- Insect
- Tetanocera ferruginea
- Gene Symbol
- Aef1
- Assembly
- GCA_958299015.1
- Location
- OY282644.1:102487760-102488765[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0043 69 5.1 0.1 20 48 185 213 170 217 0.81 2 4 2.8e-05 0.45 12.1 0.0 21 50 214 243 212 245 0.87 3 4 0.00039 6.3 8.4 0.0 21 51 242 272 240 273 0.88 4 4 0.00017 2.7 9.6 0.1 21 47 270 296 268 301 0.89
Sequence Information
- Coding Sequence
- ATGCATATAAAAAGTTTGCAACATGCGCACGCTGCAGCGGCCATGGCTAATTGCGAAATAGTCATTGTTGCTGCTTCGCCCAACAATGCTAATGATGCTAATGCAGCTGCAGCAGCCGCCGCTGCCGCCAAtgcacagcagcaacagcagcagcaacaacagcagcagcaacaacaacagcagcaacaacaacagcagcagcagcaacaacaacagcagcagcaacaacagcagcaacaacaacaacaacaacaacagcagcagcagcaacagcaacaacagactCATACAACTGAAATTCAGCTACCTTTCAATGTCCATCTAACCGCTGCTAGCGCTGAAGCACACGCAGCCGCACAAGCTGCCGCCATGGCTGCGGCTCAAGCAGCAGCTCAAGCAGCTGCCGCTGCTGAAGCCCACCAACAGCATCCGGGCCATCATCATGCCATGTTGCAACAACATCCTTTGGCACATCTTGTGGCCACGGCTAGCACTAGTCCGGCTCTGTCCGAAGATCACTATGCTGGCGAACGAAATGGTCATGCGGCAGGTGGCCCGGAGAAACCCTTCCAATGCAATGTGTGCGAACGACGATTTCGTCAGCTTAGCACGCTGACCAATCACGTCAAGATACACACCGGCGAGAAACCGTACAAATGCAACATTTGTGATAAAACATTTCGTCAATCGTCCACGCTAACCAATCACATGAAGATTCACACCGGTGAGAAACCATTTACGTGCACCTTCTGTCCGAAGAACTTTCGTCAGCTAAGCACGCTGacaaatcatttgaaaattcaTACAGgTGAAAAACCCTTCGAATGTGCCGTCTGCAAAAAACAATTCCGCCAGTCTAGCACGCTTAACAATCACATAAAGATTCATGTCATGGACAAGGTCTACTTGcccatgaaaataaaaactgagGAGGATGAGGGGTGA
- Protein Sequence
- MHIKSLQHAHAAAAMANCEIVIVAASPNNANDANAAAAAAAAANAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTHTTEIQLPFNVHLTAASAEAHAAAQAAAMAAAQAAAQAAAAAEAHQQHPGHHHAMLQQHPLAHLVATASTSPALSEDHYAGERNGHAAGGPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNICDKTFRQSSTLTNHMKIHTGEKPFTCTFCPKNFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYLPMKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00625175;
- 90% Identity
- iTF_01181401;
- 80% Identity
- iTF_01415293;