Csim032240.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- Aef1
- Assembly
- GCA_951812925.1
- Location
- OX638371.1:97770908-97772911[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.011 1.2e+02 4.2 0.7 22 47 170 195 160 200 0.79 2 4 3.3e-05 0.36 12.2 0.0 21 50 197 226 194 228 0.87 3 4 0.00074 8.2 7.9 0.0 21 51 225 255 223 256 0.88 4 4 0.00021 2.3 9.7 0.1 21 47 253 279 251 284 0.89
Sequence Information
- Coding Sequence
- ATGCATATTAAAAGCTTACAACATGCACACGCTGCTGCGGCTATGGCCAATTGTGAAATAGTCATCGTTGCTGCTTCACCAAATAATGCCAACGAAAGTGCTGCTGCCGCTGCAGCAGCTGCTGCTAATgctcaacagcagcagcaacaacaacaacaacaacagcagcagcaacaacaacaacaacaacaacagcagcagcagcaacaacagcagcaacagcagcaaaacCATACTACTGAAATTCAATTACCATTTAATGTCCATCTGGCTACTGCTAGTGCTGAGGCACATGCTGCAGCACAAGCAGCTGCTATGGCAGCGGCCCAAGCAGCAGCCGCCCAAGCTGCCGCCGCTGAAGCGCATCAACAGCATCCTGGCCATCATCATACAATGATACAGCAACATCCATTGGCACATCTTGTTGCCACGACAAGCACAAGTCCAACTATATCCGAGGATCATTATATCGGTGGTGATCGTAATGGCCATCATAATCCTGGTCCTGAGAAACCCTTCCAATGTAACGTTTGCGAACGCCGATTTCGCCAATTGAGCACATTAACCAATCATGTAAAGATACATACTGGCGAGAAACCCTACAAATGTAACATTTGTGATAAGACCTTTCGTCAGTCGTCCACTCTAACAAATCACATGAAAATTCATACCGGCGAAAAACCATTTACGTGCACCTATTGTCCAAAGAATTTTCGGCAGCTGAGCACGTTAACgaatcatttaaaaattcatacaggtGAAAAACCTTTTGAATGCGCCGTCTGCAAAAAACAATTCCGCCAGTCCAGCACACTCAATAATCATATAAAGATTCATGTTATGGACAAGGTTTATTTGCCCATGAAAATCAAAACTGAGGAAGATGAAGGATGA
- Protein Sequence
- MHIKSLQHAHAAAAMANCEIVIVAASPNNANESAAAAAAAAANAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQNHTTEIQLPFNVHLATASAEAHAAAQAAAMAAAQAAAAQAAAAEAHQQHPGHHHTMIQQHPLAHLVATTSTSPTISEDHYIGGDRNGHHNPGPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNICDKTFRQSSTLTNHMKIHTGEKPFTCTYCPKNFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYLPMKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00625175;
- 90% Identity
- iTF_00972559;
- 80% Identity
- iTF_00258287;