Drub007586.1
Basic Information
- Insect
- Drosophila rubida
- Gene Symbol
- -
- Assembly
- GCA_035046165.1
- Location
- JAWNOF010000021.1:14870535-14872148[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7 9.3e+03 -3.8 0.1 11 19 123 131 122 135 0.76 2 4 4.3e-15 6e-12 44.9 0.0 2 45 368 411 367 411 0.95 3 4 0.074 1e+02 2.5 0.0 28 37 441 450 441 455 0.90 4 4 1.8e-20 2.5e-17 62.1 0.0 2 42 477 517 476 519 0.96
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACAATTATGGATATCCAGCGTGTGCTGCTCGATCAGCAGAGCAACAATCAGCAATGCGAAGTTCTTCTGGTGGCCAAAGACGGCATCAGTGTGCGCGCACATCTCTTCGTGCTTAGCACTTGCAGCGATCTCATGCGCAACCTACTTGTCGACTTGCCTCTCGGCCAGGAGGCCACCGTGATTCTGCCAGACATACGCGGCGAACTGCTCGAGAGTATGCTGTCATTCATCTACATGGGCGAGACGAGTTTGCCTTCGGCCCTGCTTACCGAATTTCTGGAGGCTATCAATCTGCTGGGCATCAAGTCGGCCATCAGCTTTGAAACGAATCCCACTGCAATGAGTACAGCAAGTGTAGTGAGTGGCGCCATGGCCGTGGAAGCAGCGAAGTCCATAAGTGGTCTCCACATTGCCAATACCACATTGCTGCacgaggaggaagaggaggaagAAGATGTGTCCAATGTTGTGGTAGGCAAGCTGGAGGTGGGCAACACGGTGCTCACGGATCCGCAGCagaatcaacagcagcagcagcaggagtttCTCGACGTGTACAGTGATCAACCGAAAATCACATATTCCATTGAGCACATGGGTGGCACATCGAGTGGCAATCAATATATCCTCACAGAGAACACGGGCACATTTACGATCACACAGTCGGCAGGCTCAGTGACCaagttggctgctggctcCACAACTGTTGTGGATGCCGTCACGTGCGATGAGTTGACCGTTCATGATGATGCCGACGCTGATGTGGATGATGCTGAGCACGATGAGTCCGAATCTCATTTGATCGAAGAGCACTATGTGCCCTCGGGGGGTCCGTTGATAGAGATGAGTGGCGATGCTGATGTGGATATGACTGAGGACGCTATGCATGAGGACGAAGCTGGCGAAGAGGACGAGGAAGAAGAGGAATTGATGGATGTTAAACCACGCAAATCACAACTTGATTTCAAGCTCGTGAAGACCCGCgtacagcaacgacaacaatcagGTGCCAAAGCCTCCAAGAAGACAATGACCAAGCAACATCAACAGTTTGCTGCACTTAAAAAGGAAATCAAGGACGATATCAACGATGCACTAGAactggcagcagttgctgtgctCCACGAGGGACTTAGTCTGCAAAAGGCAGCGGATCGTTTCGACATCTCAAAAACCGTCTTGTGGCGTCGTGTGCGGTCAAATCCTGCCTACATGCGCATCAAAAAGGAGAAGCCATCCCTCTCAGAGGCATATGAACGTTTGAAGAATGGCGATTCGCTGAAGAGCATTAGTCTAGACTTGAGGATCCCCATGTCCACGTTACATCGTCATAAGGTGCGACTAGCGGCCCAAGGTCGATTGCCCGACACTGTGGCGTGTCGAAGACGGGACAGCACACCGAAGGACGAGCTGCGGGAAAAGTTGGCGAAAGCGGTGCATGCCTGCATCAATGGTGGCATGTCGCAGAATCATGCAGCAAATCTTTTCGAGATACCCAAGAGCACACTTTGGCGTCACTTGCAACGCCGGGTCACAGAGGCTGAGCGTAAGGTCAaagaggagcaggaggaggacgaggaggaagATATTTTAAGTTAA
- Protein Sequence
- MGHSSTIMDIQRVLLDQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPLGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMSTASVVSGAMAVEAAKSISGLHIANTTLLHEEEEEEEDVSNVVVGKLEVGNTVLTDPQQNQQQQQQEFLDVYSDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSAGSVTKLAAGSTTVVDAVTCDELTVHDDADADVDDAEHDESESHLIEEHYVPSGGPLIEMSGDADVDMTEDAMHEDEAGEEDEEEEELMDVKPRKSQLDFKLVKTRVQQRQQSGAKASKKTMTKQHQQFAALKKEIKDDINDALELAAVAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKKEKPSLSEAYERLKNGDSLKSISLDLRIPMSTLHRHKVRLAAQGRLPDTVACRRRDSTPKDELREKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDEEEDILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610763;
- 90% Identity
- iTF_00589644; iTF_00472462; iTF_00556610; iTF_00556455; iTF_00562574; iTF_00553811; iTF_00562390; iTF_00472283; iTF_00553661; iTF_00520550; iTF_00520737; iTF_00614108; iTF_00614295; iTF_00509021; iTF_00509205; iTF_00595167; iTF_00595348;
- 80% Identity
- iTF_00589644;