Dniv008535.1
Basic Information
- Insect
- Drosophila niveifrons
- Gene Symbol
- -
- Assembly
- GCA_035046325.1
- Location
- JAWNOC010000052.1:17292279-17293925[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.7e-15 4.2e-12 45.5 0.0 2 45 379 422 378 422 0.95 2 3 0.07 1.1e+02 2.6 0.0 28 37 452 461 451 466 0.90 3 3 1.8e-20 2.8e-17 62.1 0.0 2 42 488 528 487 530 0.96
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACAATTATGGATATACAGCGTGTTCTGCTTAACCAGCAGAGCAACAATCAGCAATGTGAAGTCCTTCTGGTAGCCAAAGATGGCATCAGTGTGCGCGCTCATCTCTTCGTGCTCAGCACCTGCAGTGATCTCATGCGCAATCTGCTAGTTGACTTGCCAGTAGGCCAGGAGGCCACCGTCATTCTGCCAGACATCCGCGGTGAGCTACTCGAAAGCATGCTGTCGTTTATCTACATGGGCGAGACGAGTTTGCCTTCAGCGCTGCTCACCGAATTCCTGGAGGCGATTAATCTGCTGGGCATTAAATCTGCCATCAGCTTTGAAACAAATCCCACAGCAATAAGCACGGCAAGTGTTGTGAGTGGCGCAATGGCTGTGGAGGCTGCCAAGTCCATAAGTGGCTTACATATTGCCAATACTACACTGATGCAGGAAGaagacgaggaggaggaagaggttGCCAATGTGGTGGTGGGCAAGATGGAAGTCGGCACCAATGTGCTCAATgatccacagcagcaacagcagcagagtcaacaacagcatcagcagcaggatGGCGCCAGATCGCTTGAGTTTCTCGATGTCTACAGTGATCAGCCGAAAATAACATATTCCATTGAGCACATGGGCGGCACATCGAGTGGCAATCAATACATTCTAACCGAGAATACGGGCACATTTACTATCACACAATCAGCATCGTCAGTGTCTAAGTTGACTGGTGCCACAACCGTTGTGGATGCTGTGACCGGCAATGAGTTGGCTGTCGATGATGCCGAggctgatgttgatgatggtgAGCACGATGAGAGTGAGTCGCATCTGATCGAAGAGCATTACGTGCCCTCGGCTGGTCCTCTGATCGAGATGGGTGCGGATGCTGATGTGGAAATGGCTGAGGATGCCATGCATGAGGAGGATGTTGGCGACGTGGAAGATGAGGAGGAAGATGAGGAATTAATGGATGTTAAGCCACGAAAATCGCAGCTGGACTTAAAACTTGTCAAGACCCGAGTGCAGCAACGTCCACAGCCATCTGCGAAGGCCTCCAAAAAGACAATGAccaaacaacatcaacagttTGCAGCACTTAAAAAGGAAATCAAGGACGATATCAACGATGCACTGGATCTGGCGGCAGTTGCGGTTCTCCATGAGGGTCTTAGTCTGCAGAAGGCTGCGGATCGTTTCGACATATCGAAGACAGTGTTGTGGCGACGTGTGCGCTCCAATCCCGCCTACATGCGTATCAAGAAAGAAAAGCCATCGCTATCAGAGGCATATGAACGTCTGAAGAATGGTGATTCGCTTAAGAGTATCAGCCAAGATCTGCGTATTCCTATGTCCACATTACATCGCCACAAAGTGAGACTTGCGGCCCAAGGTCGATTGCCCGAGTTTGTGGCTTGTCGCAGACGAGACAGTACGCCAAAAGACGAGCTACGAGAAAAGCTGGCCAAAGCTGTGCATGCCTGCATCAATGGTGGCATGTCACAGAATCATGCGGCGAATCTCTTCGAAATACCCAAGAGTACACTATGGCGTCACTTACAACGCCGCGTCACAGAGGCTGAGCGTAAGGTcaaggaggagcaggaggaaGATGATGAGGAGGATATTTTAAGTTAA
- Protein Sequence
- MGHSSTIMDIQRVLLNQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAISTASVVSGAMAVEAAKSISGLHIANTTLMQEEDEEEEEVANVVVGKMEVGTNVLNDPQQQQQQSQQQHQQQDGARSLEFLDVYSDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVSKLTGATTVVDAVTGNELAVDDAEADVDDGEHDESESHLIEEHYVPSAGPLIEMGADADVEMAEDAMHEEDVGDVEDEEEDEELMDVKPRKSQLDLKLVKTRVQQRPQPSAKASKKTMTKQHQQFAALKKEIKDDINDALDLAAVAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKKEKPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLAAQGRLPEFVACRRRDSTPKDELREKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDEEDILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610763;
- 90% Identity
- iTF_00589471;
- 80% Identity
- iTF_00562574;