Dsia013300.1
Basic Information
- Insect
- Drosophila siamana
- Gene Symbol
- -
- Assembly
- GCA_035047445.1
- Location
- JAWNPP010000138.1:154309-155919[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.2e-15 1.3e-11 43.8 0.0 3 45 368 410 366 410 0.94 2 3 0.068 97 2.6 0.0 28 37 440 449 439 454 0.90 3 3 8e-19 1.2e-15 56.8 0.0 2 42 476 516 475 518 0.93
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACCATTATGGATATACAGCGTGTGCTACTCAATCAGCAGAGCAACAATCAGCAATGCGAAGTCCTTCTAGTGGCTAAAGACGGCATCAGTGTGCGCGCCCATCTTTTCGTGCTCAGCACTTGCAGCGATCTCATGCGCAACCTACTTGTCGACTTACCGCTCGGCCAGGAGGCCACCGTCATTCTGCCCGATATACGCGGCGAGCTGCTCGAGAGTATGCTATCGTTCATCTACATGGGCGAGACGAGTTTGCCTTCGGCCCTGCTCACCGAGTTCCTGGAGGCCATCAATCTACTGGGTATCAAGTCGGCCATCAGTTTTGAAACGAATCCCACAGCAATGAGCACTACAAGTGTCGTGAGTGGGGCCATGGCTGTGGAAGCAGCCAAGTCTATCAGTGGTCTGCACATTGCCAATACCACACTGCTGCATGAGGAGGAAGACGAGGAAGAAGATGTACCCAACGTGGTGGTTGGCAAGCTGGAGGTGGGCAACACGGTGCTCTCGGATCCGCAACAGAgtcaagagcagcagcaagaattTCTCGATGTGTACAGTGATCAGCCGAAAATTACATATTCCATTGAGCACATGGGCGGGACATCGAGTGGCAATCAATACATCCTCACAGAGAACACGGGTACATTTACCATCACACAGTCGGCAGGTTCAGTCACCAAGTTGGCTGCTGGCTCTACAACAGTCGTGGATGCCGTTACCTGCGATGAGTTGACCGTCCACGATGATGCCGACGCTGATGTGGATGAGCCTGACCAGGATGAGTCCGAGTCACATCTTATCGAAGAGCACTATGTGCCCTCGGGAGGCCCTTTAATAGAAATGGGAGCCGACGCTGATGTGGATATGACGGAGGACGCTATGCACGATGATGAAGCCGgagaagaggaggaggaggaagaggaatTGATGGATGTTAAGCCACGCAAGTCGCAGCTGGACTTCAAGTTGGTCAAGACCCGGGTacatcaacgacaaccacCGGGTGCTAAGGCCTCCAAAAAAACCATGACCAAGCAACATCAGCAGTTTGCTGCActcaaaaaagaaatcaaagatGATATAAAAGAAGCATTGGATCTGGCAGCAGTTGCGGTACTTCACGAAGGTCTCAGCCTGCAAAAGGCAGCGGATCGTTTCGACATCTCGAAAACCGTCTTGTGGCGTCGTGTGCGGTCAAATCCTGCCTACATGCGCATCAAGAAAGAGAAACCATCACTCTCGGAGGCTTATGAACGTTTAAAGAATGGCGATTCGTTAAAAAGCATTAGCCAAGACTTGAGGATTCCCATGTCGACGTTACATCGCCACAAGGTGCGACTAGCTGCCCAAGGTCGTCTGCCCGAAACTGTGGCGTGTCGAAGACGGGACAGCACGCCAAAGGACGAGCTACGGGAGAAGCTAGCCAAGGCGGTGCACGCTTGCATCAATAGTGGTATGTCTCAGAATCATGCCGCCAATCTGTTCGAGATACCCAAAAGCACGCTTTGGCGTCACTTGCAAAGGCGGGTCACAGAGGCTGAGCGTAAGGTCAAAGAGGAACATGAGGAGGACGACGAAGAAGATATTTTAAGTTAA
- Protein Sequence
- MGHSSTIMDIQRVLLNQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPLGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMSTTSVVSGAMAVEAAKSISGLHIANTTLLHEEEDEEEDVPNVVVGKLEVGNTVLSDPQQSQEQQQEFLDVYSDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSAGSVTKLAAGSTTVVDAVTCDELTVHDDADADVDEPDQDESESHLIEEHYVPSGGPLIEMGADADVDMTEDAMHDDEAGEEEEEEEELMDVKPRKSQLDFKLVKTRVHQRQPPGAKASKKTMTKQHQQFAALKKEIKDDIKEALDLAAVAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKKEKPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLAAQGRLPETVACRRRDSTPKDELREKLAKAVHACINSGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEHEEDDEEDILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610763;
- 90% Identity
- iTF_00589471;
- 80% Identity
- iTF_00595348;