Dimm004009.1
Basic Information
- Insect
- Drosophila immigrans
- Gene Symbol
- -
- Assembly
- GCA_963583835.1
- Location
- OY757141.1:35343363-35344985[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.7e-15 6.9e-12 44.9 0.0 2 45 371 414 370 414 0.95 2 3 0.075 1.1e+02 2.6 0.0 28 37 444 453 443 458 0.90 3 3 2e-20 2.9e-17 62.1 0.0 2 42 480 520 479 522 0.96
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACAATTATGGATATCCAGCGTGTTCTGCTCAACCAGCAGAGCAACAACCAGCAATGCGAAGTCCTCCTGGTGGCCAGAGACGGCATCAGCGTGCGCGCCCATCTTTTTGTGCTCAGCACCTGCAGCGATCTCATGCGCAACTTACTCGTCGACTTGCCCGTCGGCCAAGAGGCCACCGTAATTCTGCCCGACATACGCGGCGAGCTGCTTGAGAGCATGTTGTCGTTCATTTACATGGGTGAAACGAGTTTGCCGTCGGCGTTGCTCACCGAGTTCCTGGAGGCCATCAATCTGTTGGGCATTAAGTCAGCCATCAGCTTTGAAACGAATCCCACAGCGATGAGCACAGCGGGTGTCGTGAGTGGGGCTATGGCTGTGGAGGCAGCTAAGTCCATAAGTGGATTGCACATTGCCAATACTACACTGCTGCCggaggaagaggaggaggaggaagatgTCTCCAATGTAGTGGTTGGCAAGCTGGAGGTGGGCAACACGGTACTCGCTGATGCGCAGCAtagtcaacagcagcagcaggatggCGGCAGATCGCTGGAGTTTCTCGATGTCTACAGTGATCAGCCGAAAATCACATATTCCATTGAGCACATGGGTGGCACATCGAGTGGCAATCAATACATCCTAACCGAGAACACGGGCACATTTACCATCACACAATCGGCATCGTCGGTGACCAAGTTGGGCGCAGCCACAACTGTGGTGGATGCCGTCACTGGCGATGAGTTGGCTGTCGAAGACGCCGAGGCAGATGTGGACGATGCTGATCACGATGAGTCCGAGTCGCATCTCATTGAGGAGCACTATGTGCCGTCGGCTGGGCCTTTAATAGAAATGGGAGCCGATGCTGATGTGGAAATGAATGAGGATGCAATGCACGAGGAGGATGTGGGCGATgaggatgacgatgacgaggaATTAATGGATATTAAGCCACGCAAATCGCAGTTGGACTTGAAGCTGGTCAAGACTCGCGTACAGCAGCGTCAGCAGCCAGCTGCCAAGGCCTCCAAGAAGACAATGAccaaacaacatcaacagttTGCCGCTCTCAAAAAGGAAATCAAGGATGATATCAATGATGCACTGGAACTGGCAGCAGTTGCGGTGCTCCACGAAGGTCTCAGCCTGCAAAAGGCGGCGGATCGTTTCGACATATCGAAAACAGTCTTGTGGCGTCGTGTGCGCTCCAATCCTGCCTACATGCGCATCAAAAAGGAGAAGCCATCTCTCTCCGAGGCATATGAACGCTTGAAGAATGGCGATTCACTGAAGAGTATTAGCCAAGATCTGAGAATTCCCATGTCGACGTTACATCGCCACAAGGTCCGACTGGCGGCCCAAGGTCGTCTGCCCGAATTTGTGTCCTGCCGAAGGCGCGACAGCACGCCGAAGGACGAACTGCGGGAGAAGCTGGCAAAGGCAGTGCATGCCTGCATCAATGGTGGCATGTCGCAGAATCATGCGGCGAATCTCTTCGAGATACCCAAGAGCACACTCTGGCGTCACTTGCAGCGCCGGGTCACAGAGGCTGAGCGTAAGGTCAAGGAGGAACAGGAGGAAGACGAAGAGGAGGATATTCTAAGTTAA
- Protein Sequence
- MGHSSTIMDIQRVLLNQQSNNQQCEVLLVARDGISVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMSTAGVVSGAMAVEAAKSISGLHIANTTLLPEEEEEEEDVSNVVVGKLEVGNTVLADAQHSQQQQQDGGRSLEFLDVYSDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVTKLGAATTVVDAVTGDELAVEDAEADVDDADHDESESHLIEEHYVPSAGPLIEMGADADVEMNEDAMHEEDVGDEDDDDEELMDIKPRKSQLDLKLVKTRVQQRQQPAAKASKKTMTKQHQQFAALKKEIKDDINDALELAAVAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKKEKPSLSEAYERLKNGDSLKSISQDLRIPMSTLHRHKVRLAAQGRLPEFVSCRRRDSTPKDELREKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDEEEDILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610763;
- 90% Identity
- iTF_00589471;
- 80% Identity
- iTF_00520737;