Dnov011509.1
Basic Information
- Insect
- Drosophila novamexicana
- Gene Symbol
- -
- Assembly
- GCA_003285875.3
- Location
- NW:2176651-2185671[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.04 2.2 8.5 0.3 1 23 1274 1297 1274 1297 0.94 2 13 7 3.7e+02 1.4 0.2 1 23 1462 1484 1462 1484 0.91 3 13 0.00016 0.0083 16.1 2.7 2 23 1487 1508 1487 1508 0.97 4 13 6e-05 0.0032 17.4 0.2 3 23 1516 1536 1514 1536 0.98 5 13 5e-07 2.7e-05 23.9 4.1 2 23 1543 1564 1542 1564 0.97 6 13 4.8 2.5e+02 2.0 0.4 5 23 1577 1595 1575 1595 0.96 7 13 1.2 63 3.9 5.4 3 23 1602 1623 1600 1623 0.93 8 13 0.13 6.7 6.9 0.2 2 23 1634 1654 1633 1654 0.96 9 13 4.8e-05 0.0026 17.7 0.4 1 19 1660 1678 1660 1682 0.95 10 13 1.4e-05 0.00073 19.4 0.5 1 23 1690 1712 1690 1712 0.98 11 13 9e-05 0.0048 16.8 7.6 1 23 1718 1740 1718 1741 0.96 12 13 0.00018 0.0093 15.9 5.9 1 23 1746 1768 1746 1768 0.98 13 13 0.025 1.3 9.1 8.2 1 23 1774 1796 1774 1797 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACTGTGTGCAGTGCCCCGTGTGCACGCTGTATCTGCATGCGGGCATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTCATCAAGGCTCTGGTGCAAATGACCATAGCTGGCAACAATGGCATGGGCAGCGCCTTGGCTGCAGCTGTGCTCTCCGGGAGCGGCACGGCAATAGATGGCGGCACTGCATCTAGctcatcctcatcatcatcatcgtcatcatcatcatcaacgacGACGGCGGCTGATGTGAAACCAGTTGTGCTAGATGTAGTTCCTGCaccaacaacatcaacagcatcTAAATCAACAGCACCCAAAGCTGCCTTGcctagcagcagcaacaacaatagcaacaaattgAGCAATCCACCGATTAAGGCAGTTAAAAGCGCGCCACCCACGACTGAGGCGCCAGCCAACACATCCAATGCACCCACCACTAGCAGCACGAGCGCCATTTACTCCGACTATCGCtatgagcagcagccgcaacagccgcagcaccAGCAGGCGACGCTGCACGGGTTTGCACGTGGTGCCACCACGCTGTTAATACCGCAAgcgccacaacagcagcatcagtaTCTGGCCAACCAACAGCACTTtgcccaccagcagcagcagcaacaacagcagtcgGCCATGAAGTACACCTATGCAGCAGCGCttccaccgccgccgccgccactgCAGCTCTTTGCGCAGCAGGCGACGTCAACGCAGTCGCATCAGAAGCCACCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGcacaaccaaaacaaacaacaacaacaacagcaacagacacaacaacaacaacacataaGCATACAACACAGCGTTAACCTTGCACCACCGAGTGGCAAACATGGCAAAGTCCACACGGATATCTTCTTGAATCCACCGCCTCCACCAGCGCCACAGATCACGATTCCGtcaacgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcattgtCAAGACTGCAACATGCGCAACAGCACCAACAATCTCTTGCAGCCGGCAGCTATGCAGGTGCCAACTGCGCCAGCTCCTCTGCGACTTTGATGTCATCCACCTCCGTCGGACGCGCCAGCAACTGTCGCCAAACGAGCAATTCGCCTTTTGGTGCGCTCTTAAATGCCGCAGCGCAGGCCGCCTGCGCCTCGCCCGTTACCTCCAGTGCGTCTGTGCTGCGCTATGCCGAGTCACCAGTGGCCCACTATCTAGAGCGAGAGAATGGCGACTTTATAGTCCAGGAGACGCCCAAGCACATTGTCGAGTGCGTCGAGAAGGATGACGGCGAGTTCTCCGTGATTGAGCGCATCTATCAGTCGCCACCCAGCGTGCTGCACATacacgacgatgacgacgacgaggaggaggacgagGATGACAAGGGCTGGAACAGCGATGATGAGGATCACATGAAGGTGGAAGATCATGTAGAGGATGGTGACGACGAGCACGAGGATAGCCGCAGCCGAGTTGCACCCAAGACCACAACGAAAAAGTCACGCaagacaaaagcaaatggAAGAAAGCACAAACGCGCCACCAAGCATCAGCCGGAAGATGAGGACGACTTTATGAGTCTAGGCAGCAGCTGTGCAGAAAGTGAACATCatgcagagcagcagcagattctGGTGCAGCTTTCGCTTGCGTCCTCTTCGCCAGCTCAACTAAGCACGGCGCCTTCGACGAGCagtggagcagctgctggtgctgttgccAACGCGTCCCCCTCCCCCACCTCTTCTGGCAGTGCCAATTCGACGCCTAGCGGCTCCACAAAGTCCAAAAAGAATCGCGTGACGGTGCTCAGCGATGTGCCGCTCAACATGAACGAGTATTTGGATCTGGTGGGCAACATTGTGGCATCAGGGCGCATTGGTGCAGCACGTCCGTTTGCTGCCGTGGCGCCCATACCGTTGGTCAAGGTGGAAAAGGAGGAGCCAATGGACGACTACGACACCGTACAGGCTGCAGTGGAGCAGGCTGCAGTGGAGCAAAAGCCCAGCGTTGAACAtgccagtggcagcagcagcaacagcagcagcagtggccaCGGCACCACAAGCGTCATACGCATGGCAGCCAGCActagcaccagcaccagcagcggcagcggcacaaACGTTGCTAACGAGGATCTCACACAGCCGCCGCCAATGAAAGTGGAAGTGGAGCCAAcgatgctgctgccgcaaCGCTTTTCAGCTCCAGCGCAGCAGCGTGGACCCAAGAAATTAGTCATCAAGCCAAAGGCCACAGCGACGGCAACGACAAAAAAGACTGAGAACAACGCTGCCGAAACAGCCAGCATATCAAAGGCGTCCACAGAGCTGGTGCAGGTGAAGAGCGAGAATGTGGaggcagccgcaacaacaagcgGCAGCATACTAGAGAAGCATCTGACCACCAGCTATGcggcacagcagcaggcgcGCAAACACTCTGCAgtcaatgatgatgatgctcgCGTGCTGCTGGAGTTTGCCAATTCGAAGCAACTGCCGCTAGCGGGTAATAGCAACCAGACCACGTTTGTGGTAAATGCGGCCAGCTTTGCCTCGGCGGGCTCCGTAtttgccagcggcagcagcggcagtgcGAAGAAGTCAAGCAAGCCGGGCGACGAGTACATTCTGCCTGATGATAACAATCTGGAGGTGGATGAAATTGTGATATCCTCCTCGTCATCCTATGCCTCTAattcgcagcaCatgcagcagtcgcagcagccgTCCGCCTTCAcagatttcaattttctttacCATCAAAATgcaaccgcaacaacagcggcagcggcagctgcagcggcagctgcaagtGCGGCGGCAGCTTCCCACTTTGCAGAATTTGGCATACATCaagagcaagagcagcaggagcaggtaTTGCAGCATCATCCACAGCATGGCTCTAGCGAGGCCACTAATGCCGCCACGCTGGCCTCCTCCTCTAGCAATTCATCGGTTATGGATCAGGATTGCTCCATGAATGCCACGTTTCGCTTGGGCAAGCAACAATCCACATTGGCTGGCTGGtatcagccgcagcagcagcagcagctacaggcAAGCAGTTCGCACAGCTGCCATGTGGAACAGTCGAGCCATTTTATTGCCGCACTCGCAGCCGTTGACTGCTGCAACAGTGTGGCGGGCGTTGATAGCGATGTTAAGTATTTGGATCTGGATACTTGCAAGCGGGAACAgttaagcaacagcagcagccatttgCCTTCCgtatccgcatccgcatcgaCAACATCCTCATCATTTGCGGCCGCCGCCACGGAGAGCAGTCTAGTAAGCGGCTTGGGCCTTAACATACGCACCGATGAGAAAATGCCCGCCAAGGGTGAAATCTCCGAGCAGGAAAGCAACTGCGATATTGAGAACTCCTGGAGTCAATCGATGTATGGTGACATATCACAGCGCTATTTTAGAAATCAGTTTACGGATGGCTATCATCAGCAGCTGGCTGATTGGCGTCACGATTCCTATCCGCCGCAGGACCTCagtggccaacagcagcagcgtgaGCCAAAGCGCTTTGATTTCAACGCTGTCGCCTCGGAGTACGCGCAATCGGGCGAGCTGGACGCTTCCCCGAGCTCAAACAGACACAATCATTTGTTGGATGCACAGCCCACTGCTTCCTCGTCGTCATCGGCTTTGCTGGCTGGTCCACCAATAGCCTCGACGTCACGGGCTGCTGCCGAAGCGGAGGCCGTCGCTGCAGCGATGGCGCAACGAAAGCCACCGCGTCGCAAGATCTACAAGTGTCCGCACTGTGTGGTCATCTTTGAGAAGCTGAAGGAGCGCAATGCGCACATGATTGGCGAACACAACTATGTGCGCCAGAATCGACGACTCATCTGCACGCAGCCGCAGGTCGATGCCACAATGCTAGCACAGCCGCCGGCtcaagagcagcaacagcagctccagcagcaaGTCCTGCTGCAGTCTGTGGGGCAAAGCAATGGCGATGTTGTGCATGAGGATTCAAAGGATGGTATTGTAAAAATCAAGCAGGAACACTGCCAAGATAAACAGGATTCATCGGAGCAGCTGCTTGGCCAAATGGATATGCCTGACGTCAAGGATGCTGACCTGCTAGATGCCAGCGCTGATAATGGTCGCGATGCGGACATGAAGCCACCAGCCAACGTCTCAGAGCTGGACGAGAAGCCAGCCATAGCGCCGTTAGCCATGACCACACCAGCTGCCAAGCTAGCTGCTCTTTATCGCATGCTCATTGCCTACAATGAGTCAAAGCTAGGCCAGGAGCGCAACAATCTCAGCGAGCTGGAGCAAAAGGCCATGGAGAAATCTATATTCCTCTGTTATGTGTGCCGCACCGATTTCCCCTCAGTAAAGCTGTACGATGCACATTTGACAGAGCATCCCGCTGAATGTTTCACCTGTGGCAAGAAATTCTATCGCTGGAAGAACTTTTCACTGCATTTGAAAAGGCATCTGGGCTGGAAGGAGTTCGGCTGTTATGTCTGCGACAAGAAGTTTGTGGTGCGCAGCGCGCTAGTGGAACACATGCGCATGCACACGGGCCAGACGCCGCTCAAGTGCAAGATATGCGGCAAAAAGTTCAAGCGCTATTCGAACTTGACACAGCATCGCAAGCGTCACACCAAAATGATGGTGCGCAAGAAGGAGTACGTGTGCCATTGTGGCGAGGTGTTGCCGTCCAAGGCGCGCTTCCTGTGGCACAAGGAGACCCACGACTTGAAGCCCAAGTGCTGTCCGTATTGCTGCGATCGTTTCGTACATGCCAATTCGCTGCGTAGGCACATTCGACTGGCCCATTCGGATAAGTTTGATTATGCCGAGCCGATGGAGTGTCCCATGTGCAAGCAGATCTTTGCCAAGACCTCCATCAAAGCGCACATGGCTACACATTCGACGGATCCGCAATACGATTGCGCCATATGCAACAAGAGCTTCTCAACCAAATGGAATCTGAAGATACATTCGTGGGTGCATGCGAATCGCACGGCCAAACCGTTCAAGTGCGAATACTGCCCCAAGGCGTTCGTTCGCGAGCTGGACTTCAAGAACCACATGAATGCCCATAAGCAGATCAAGCCCTACACCTGTGAGTATTGCGGCTGCAAGTTCATACGTAAATACAATTATATGCGGCATCGACGGGAGCATCATGGCAACAAGAAGTTCACCTGCGACCAGTGCGACAAGTCTTTTCATCGTCATTATTATCTGATCGAGCATCGGCGCATCCACACTGGAGAGCGTCCCTTCCATTGCACCATCTGCGGCAAGAGCTCGACGACAAAGACCAATCACAATAAGCATCTGAAGATACATCATTCGCGGGATCCTTTTACCGTCGAGGTTTAA
- Protein Sequence
- MVDCVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIAGNNGMGSALAAAVLSGSGTAIDGGTASSSSSSSSSSSSSSTTTAADVKPVVLDVVPAPTTSTASKSTAPKAALPSSSNNNSNKLSNPPIKAVKSAPPTTEAPANTSNAPTTSSTSAIYSDYRYEQQPQQPQHQQATLHGFARGATTLLIPQAPQQQHQYLANQQHFAHQQQQQQQQSAMKYTYAAALPPPPPPLQLFAQQATSTQSHQKPPPAYGAAISQIRSQHNQNKQQQQQQQTQQQQHISIQHSVNLAPPSGKHGKVHTDIFLNPPPPPAPQITIPSTSSSSSSSSSSSLSRLQHAQQHQQSLAAGSYAGANCASSSATLMSSTSVGRASNCRQTSNSPFGALLNAAAQAACASPVTSSASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDDDEEEDEDDKGWNSDDEDHMKVEDHVEDGDDEHEDSRSRVAPKTTTKKSRKTKANGRKHKRATKHQPEDEDDFMSLGSSCAESEHHAEQQQILVQLSLASSSPAQLSTAPSTSSGAAAGAVANASPSPTSSGSANSTPSGSTKSKKNRVTVLSDVPLNMNEYLDLVGNIVASGRIGAARPFAAVAPIPLVKVEKEEPMDDYDTVQAAVEQAAVEQKPSVEHASGSSSNSSSSGHGTTSVIRMAASTSTSTSSGSGTNVANEDLTQPPPMKVEVEPTMLLPQRFSAPAQQRGPKKLVIKPKATATATTKKTENNAAETASISKASTELVQVKSENVEAAATTSGSILEKHLTTSYAAQQQARKHSAVNDDDARVLLEFANSKQLPLAGNSNQTTFVVNAASFASAGSVFASGSSGSAKKSSKPGDEYILPDDNNLEVDEIVISSSSSYASNSQHMQQSQQPSAFTDFNFLYHQNATATTAAAAAAAAAASAAAASHFAEFGIHQEQEQQEQVLQHHPQHGSSEATNAATLASSSSNSSVMDQDCSMNATFRLGKQQSTLAGWYQPQQQQQLQASSSHSCHVEQSSHFIAALAAVDCCNSVAGVDSDVKYLDLDTCKREQLSNSSSHLPSVSASASTTSSSFAAAATESSLVSGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFTDGYHQQLADWRHDSYPPQDLSGQQQQREPKRFDFNAVASEYAQSGELDASPSSNRHNHLLDAQPTASSSSSALLAGPPIASTSRAAAEAEAVAAAMAQRKPPRRKIYKCPHCVVIFEKLKERNAHMIGEHNYVRQNRRLICTQPQVDATMLAQPPAQEQQQQLQQQVLLQSVGQSNGDVVHEDSKDGIVKIKQEHCQDKQDSSEQLLGQMDMPDVKDADLLDASADNGRDADMKPPANVSELDEKPAIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00526755; iTF_00551050; iTF_00534763; iTF_00490959; iTF_00506296; iTF_00617081; iTF_00475387; iTF_00531133;
- 90% Identity
- iTF_00526755; iTF_00551050; iTF_00490959; iTF_00506296; iTF_00617081; iTF_00531133;
- 80% Identity
- -