Dbor009848.1
Basic Information
- Insect
- Drosophila borealis
- Gene Symbol
- -
- Assembly
- GCA_035045885.1
- Location
- JAWNOR010000194.1:16066974-16073121[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.047 3.8 8.5 0.3 1 23 1284 1307 1284 1307 0.94 2 13 8.1 6.6e+02 1.4 0.2 1 23 1469 1491 1469 1491 0.91 3 13 0.00018 0.015 16.1 2.7 2 23 1494 1515 1494 1515 0.97 4 13 7e-05 0.0057 17.4 0.2 3 23 1523 1543 1521 1543 0.98 5 13 5.8e-07 4.7e-05 23.9 4.1 2 23 1550 1571 1549 1571 0.97 6 13 5.5 4.5e+02 2.0 0.4 5 23 1584 1602 1582 1602 0.96 7 13 1.4 1.1e+02 3.9 5.4 3 23 1609 1630 1607 1630 0.93 8 13 0.15 12 6.9 0.2 2 23 1641 1661 1640 1661 0.96 9 13 5.6e-05 0.0045 17.7 0.4 1 19 1667 1685 1667 1689 0.95 10 13 1.6e-05 0.0013 19.4 0.5 1 23 1697 1719 1697 1719 0.98 11 13 0.0001 0.0085 16.8 7.6 1 23 1725 1747 1725 1748 0.96 12 13 0.0002 0.016 15.9 5.9 1 23 1753 1775 1753 1775 0.98 13 13 0.029 2.3 9.1 8.2 1 23 1781 1803 1781 1804 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACTGTGTGCAGTGCCCCGTGTGCACATTGTATCTGCATGCGGGCATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTCATCAAGGCTCTGGTGCAAATGACCATAGCTGGCAACAATGGCATGGGCAGCGCCCTGGCTGCAGCTGTGCTCTCCGGCAGCGCCGCGGCAATAGATGGTTGCCCTGCATCCAGCtcatcctcatcatcatcatcatcatcatcaacgacGGCGGCTGATGTGAAACCAGTTGTGCTAGACGCAGCACCTGcaccaacaacatcaacagcatcaacagcatcCAAATCAACAGCACCCAAAGCTGCATTGcctagcagcagcaacaacaatagcaacaaattgAGCAATCCACCGATTAAGGCAGTTAAAAGCGCGCCACCCACGACTGAGGCGCCAGCCAACACATCCAATACACCCACCACTAGCAGCATGAGCGCCATCTATTCCGACTATCGCTatgagcagcagccgcagcaccAGCAGGCGACGCTGCACGGCTTTTCACGTGGTACCGCCACGCTGTTAATACCGCAAgcgccacaacagcagcatcagtaTCTGGCCAGCCAGCAGCACTTTGCCcaccatcagcaacagcagcaacagacggCCATGAAGTACACCTATGCAGCAGCGCttccaccgccgccgccgccactgcAGCTCTTTGCACAGCAGGCGACGTCAACGCAGTCGCATCAGAAGCCACCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGCacaaccaaaacaaacaacagcaacagacacaacaacaacaacaacacatgaGCGTACAACACACTGTTAACCTTGCACCACCGAGTGGCAAACACGGCAAAGTCCATACGGATATCTTCTTGAATCCACCGCCTCCACCAACGCCACAGCTCACGATTCCGtcaacgtcgtcgtcgtcgtcgtcgtcattgtCAAGACTGCAACATGCACAACAGCACCAACAATCTCTTGCAGCCGGCAGCTATGCAGCTGCCAACTGCCCCAGCTCCTCTGCGACTATGATGTCATCCAGCTCCGTCGGACGAGCCAGCAGCTGTCGCCAAACGAGCAATTCGCCTTTTGGTGCGCTCTTAAATGCCGCAGCGCAGGCCGCCTGCGCCTCGCCCGTTACCTCCAGTGCGTCTGTGCTGCGCTATGCCGAGTCACCAGTGGCCCACTATCTAGAGCGAGAGAACGGCGATTTTATAGTCCAGGAGACGCCCAAGCACATTGTGGAGTGCGTCGAGAAGGATGACGGCGAGTTCTCTGTGATTGAGCGCATCTATCAGTCGCCACCCAGCGTGCTGCACATacacgacgatgacgacgacgaagaGGAGGATGAAGATGACAAGGGCTGGAACAGCGATGATGAGGATCACATGAAGGTGGAAGATCATGTAGAGGATGGCGATGACGAGCACGAGGATAGCCGAAGCAGAGTTGCACCCAAAACCACAACGAAAAAATCACGCAAGACAAAAGCAAATGGCAGAAAGCACAAACGCGCCAGCAAGCATCAGCCGGAAGATGAGGACGACTTTATGAGTCTTGGCAGCAGCTGTGCCGAAAGTGAACACCaggccgagcagcagcagcagcagactcAGGTGCAGCTGTCGCTTGCGTCCTCTTCGCCAGTTCAACTTAGCACGGCGCCTTCGACGAGCagtggagcagctgctggtgctgctacCACTGCGTCCCCCTCCCCCACCTCTTCTGGCAGTGCCAACTCGACGCCCAGCGGCTCCACAAAGTCCAAAAAGAATCGCGTGACGGTACTCAGCGATGTGCCGCTCAACATGAACGAGTATTTGGATCTGGTGGGCAACATTGTGGCTTCAGGTCGCATTGGTGCAGCTCGTCCGTTCGCTGCAGTGGCGCCCATACCGTTGGTCAAGGTGGAAAAGGAGGAGCCAATGGACGACTACGACACCGTACACGCTGAAATGGAGCAGGCAGTGGAGCAAAAGCCCAGCGTTGAACATgccagtggcagcagcagcaacagcagcagcagtggccaCGGCACCACAAGCGTCATACGCATGGCAGCCAGCACAAGCACCAGCAGCGGCACAAACGTTGCTAACGAGGATCTCACACAGCCGCCGCCAATGAAAGTGGAAGTGGAGCCAACGATGCTGCTGCCGCAACGCTTTTCAGCTCCGGCGCAGCAGCGTGGACCCAAGAAATTAGTCATCAAGCCAAAGGCCACAGCGACGGCAACGACAAAAAAGACTGAGAACAACGCTGCCGAAACAGCCAGCATATCAAAGGCGTCCACAGAGCTGGTGCAGGTGAAGAGCGAGAATGTGGAGGCAGCCGTAACAACAAGCGGCAGCATACTAGAGAAGCATCTGACTACCAGCTATGCggcacagcagcaggcgcGCAAGCACTCTGCAGTCAACGATGATGATGCGCGCGTGCTGCTCGAGTTTGCCAACTCGAAGCAACTGCCGCTAGCGGGGAACAGCAACCAGACTACGTTTGTGGTAAATGCGGCCAGCTTTGCCTCGGCGGGCTCCGTATttgccagcggcagcagcggcagcgcgaAGAAGTCAAGCAAGCCGGGCGACGAGTACATTCTGCCTGATGATAACAATCTGGAGGTGGATGAAATTGTGATATCCTCCTCGTCATCCTATGCCTCTAAttcgcagcagcaacaattgcagcagttgcagcggcagtcgcagtcgcaacCAGCCCAGCAAAGCatgcagcagtcgcagcagccgTCCGCCTTTAcagatttcaattttctgtatcaaaatgcaacagcaacaacagcggcagcagcagcggctgcagcagcggcaactgcgGCGGCAGCCTCCCACTTTGCAGAATTTGGCATACATCAAGAGCaagagcagcaggagcagcaggaccAGCTATTGCAGCATCATCCACAGCATGGCTCTAGCGAGGCCACCAATGCCGCCACGCTGGCCTCCTCCTCTAGCAATTCATCGGTTTTGGATCAGGATTGCTCCATGAATGCCACGTTTCGCTTGGGCAAGCAACAATCTACATTGGCTGGCTGGtatcagccgcagcagcagcagccacaggcAAGCACCTCGCACAGCTCCCATGTGGAACAGTCGAGCCATTTTATTGCCGCACTCGCAGCCGTTGACTGCTGCAACAGTGTGGCGGGCGTTGATAGCGATGTCAAGTATTTGGATCTGGATACCTGCAAGCGGGAACAGttaagcaacagcagcagccatttGCCTTCTgtatccgcatccgcatcgaCTACATCCTCATCATTTGCGGCCGCCGCCACGGAGAGCAGTCTGGTTAGTGGCTTGGGCCTAAACATACGCACCGATGAGAAAATGCCTGCCAAGGGTGAAATCTCCGAGCAGGAAAGCAACTGCGACATTGAGAACTCCTGGAGTCAATCGATGTATGGTGACATATCACAGCGCTATTTTAGAAATCAGTTTACGGATGGGTATCATCAGCAGCTGGCCGATTGGCGTCACGATTCCTATCCGCCGCATGACCTCAgtggccaacagcagcagcagcagccccagcGTGAGCCAAAGCGCTTTGATTTCAACGCTGTCGCCTCGGAGTACGCGCAGTCGGGCGAGCTGGACGCCTCCCCCAGCTCAAATAGACACAATCATTTGTTAGATGCACAGCCCACTACTTCCTCGTCGTCATCGGCTTTGCTGGCTGGTCCACCAATAGCCTCGACGTCACGTGCTGCTGCCGAAGCGGAGGCTGTCGCTGCAGCGTTGGCGCAGCGAAAGCCACCGCGTCGCAAGATCTACAAGTGTCCGCACTGTGTGGTCATCTTTGATAAGCTGAAGGAGCGCAATGCGCACATGATTGGCGAACACAACTATGTGCGCCAGAATCGACGACTCATCTGCACGCAGCCGCAGGTCAATGCCACAATGCTGGTACAGCCGCCGGCTCAGGAGCAACGCCAGCAGCAAGTCCTGCAGCAGTCTGTAGGGCAAAGCAATGGCGATGTTGTGCATGAGGATTCCAAGGACGGTATTGTAAAAATCAAGCAGGAACACTGCCAGGATAAACAGGATTCATCGGAGCAGCTACTTGGCCAAATGGATATACCCGATGTCAAGGATGCTGGCCTGCTAGATGCCAGCGCTGATAATGGTCGCGATGCGGACATGAAGCCACCAGCCGATGTCTCAGAGCTGGACGAGAAGCCAGCCATAGCGCCGTTAGCCATGACGACACCAGCTGCCAAGCTGGCTGCTCTATATCGCATGCTCATTGCCTACAATGAGTCCAAGCTGGGTCAGGAACGCAACAATCTCAGCGAGCTGGAGCAAAAGGCCATGGAGAAATCCATATTCCTCTGTTATGTGTGCCGCACCGATTTCCCCTCCGTAAAGCTGTACGATGCACATTTGACAGAGCATCCCGCTGAGTGTTTCACCTGTGGCAAGAAATTCTATCGTTGGAAGAACTTTTCGCTTCATTTGAAAAGGCATCTAGGCTGGAAGGAGTTCGGCTGTTATGTCTGCGACAAGAAGTTTGTGGTGCGCAGCGCGCTAGTGGAGCATATGCGCATGCACACGGGCCAGACGCCTCTCAAGTGCAAGATATGCGGCAAAAAGTTCAAACGTTATTCGAACTTGACACAGCATCGCAAGCGTCACACCAAAATGATGGTGCGCAAGAAGGAGTACGTGTGCCATTGTGGCGAGGTGCTGCCCTCCAAGGCGCGCTTCCTGTGGCACAAAGAGACCCACGACTTGAAGCCCAAGTGCTGTCCGTATTGCTGCGATCGTTTCGTGCATGCCAATTCGCTGCGGAGGCACATTCGACTGGCCCATTCGGATAAGTTTGACTATGCCGAGCCGATGGAGTGTCCCATGTGCAAGCAGATATTTGCCAAGACCTCCATCAAAGCGCACATGGCTACACATTCGACAGATCCGCAATACGATTGCGCCATATGCAACAAGAGCTTCTCTACCAAATGGAATCTGAAGATACATTCGTGGGTGCATGCGAATCGCACGGCCAAACCGTTCAAGTGCGAATATTGCCCCAAGGCGTTCGTTCGCGAGCTGGACTTCAAGAACCATATGAATGCCCATAAGCAGATCAAGCCCTACACCTGCGAGTATTGCGGCTGCAAGTTTATACgtaaatacaattatatgcGGCATCGACGGGAGCATCATGGCAACAAGAAGTTCACCTGCGACCAGTGCGACAAGTCTTTTCATCGTCATTATTATCTGATCGAGCATCGGCGCATCCACACCGGCGAGCGTCCCTTCCACTGCACCATCTGCGGCAAGAGTTCGACGACAAAGACCAATCACAATAAGCATCTGAAGATACATCATTCGCGGGATCCTTTTACCGTCGAGGTTTAA
- Protein Sequence
- MVDCVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIAGNNGMGSALAAAVLSGSAAAIDGCPASSSSSSSSSSSSTTAADVKPVVLDAAPAPTTSTASTASKSTAPKAALPSSSNNNSNKLSNPPIKAVKSAPPTTEAPANTSNTPTTSSMSAIYSDYRYEQQPQHQQATLHGFSRGTATLLIPQAPQQQHQYLASQQHFAHHQQQQQQTAMKYTYAAALPPPPPPLQLFAQQATSTQSHQKPPPAYGAAISQIRSQHNQNKQQQQTQQQQQHMSVQHTVNLAPPSGKHGKVHTDIFLNPPPPPTPQLTIPSTSSSSSSSLSRLQHAQQHQQSLAAGSYAAANCPSSSATMMSSSSVGRASSCRQTSNSPFGALLNAAAQAACASPVTSSASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDDDEEEDEDDKGWNSDDEDHMKVEDHVEDGDDEHEDSRSRVAPKTTTKKSRKTKANGRKHKRASKHQPEDEDDFMSLGSSCAESEHQAEQQQQQTQVQLSLASSSPVQLSTAPSTSSGAAAGAATTASPSPTSSGSANSTPSGSTKSKKNRVTVLSDVPLNMNEYLDLVGNIVASGRIGAARPFAAVAPIPLVKVEKEEPMDDYDTVHAEMEQAVEQKPSVEHASGSSSNSSSSGHGTTSVIRMAASTSTSSGTNVANEDLTQPPPMKVEVEPTMLLPQRFSAPAQQRGPKKLVIKPKATATATTKKTENNAAETASISKASTELVQVKSENVEAAVTTSGSILEKHLTTSYAAQQQARKHSAVNDDDARVLLEFANSKQLPLAGNSNQTTFVVNAASFASAGSVFASGSSGSAKKSSKPGDEYILPDDNNLEVDEIVISSSSSYASNSQQQQLQQLQRQSQSQPAQQSMQQSQQPSAFTDFNFLYQNATATTAAAAAAAAAATAAAASHFAEFGIHQEQEQQEQQDQLLQHHPQHGSSEATNAATLASSSSNSSVLDQDCSMNATFRLGKQQSTLAGWYQPQQQQPQASTSHSSHVEQSSHFIAALAAVDCCNSVAGVDSDVKYLDLDTCKREQLSNSSSHLPSVSASASTTSSSFAAAATESSLVSGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFTDGYHQQLADWRHDSYPPHDLSGQQQQQQPQREPKRFDFNAVASEYAQSGELDASPSSNRHNHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAVAAALAQRKPPRRKIYKCPHCVVIFDKLKERNAHMIGEHNYVRQNRRLICTQPQVNATMLVQPPAQEQRQQQVLQQSVGQSNGDVVHEDSKDGIVKIKQEHCQDKQDSSEQLLGQMDIPDVKDAGLLDASADNGRDADMKPPADVSELDEKPAIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00563356;
- 90% Identity
- iTF_00563356;
- 80% Identity
- -