Dame011712.1
Basic Information
- Insect
- Drosophila americana
- Gene Symbol
- -
- Assembly
- GCA_018152915.1
- Location
- JAECXQ010000444.1:18360036-18365982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.034 2 8.8 0.3 1 23 964 987 964 987 0.94 2 13 5.9 3.4e+02 1.7 0.2 1 23 1152 1174 1152 1174 0.91 3 13 0.00013 0.0077 16.3 2.7 2 23 1177 1198 1177 1198 0.97 4 13 5.1e-05 0.003 17.7 0.2 3 23 1206 1226 1204 1226 0.98 5 13 4.2e-07 2.5e-05 24.2 4.1 2 23 1233 1254 1232 1254 0.97 6 13 3.8 2.2e+02 2.3 0.4 5 23 1267 1285 1264 1285 0.95 7 13 0.99 58 4.1 5.4 3 23 1292 1313 1290 1313 0.93 8 13 0.11 6.2 7.2 0.2 2 23 1324 1344 1323 1344 0.96 9 13 4.1e-05 0.0024 18.0 0.4 1 19 1350 1368 1350 1372 0.95 10 13 1.2e-05 0.00068 19.7 0.5 1 23 1380 1402 1380 1402 0.98 11 13 7.6e-05 0.0044 17.1 7.6 1 23 1408 1430 1408 1431 0.96 12 13 0.00015 0.0086 16.2 5.9 1 23 1436 1458 1436 1458 0.98 13 13 0.021 1.2 9.4 8.2 1 23 1464 1486 1464 1487 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACTGTGTGCAGTGCCCCGTGTGCACGCTGTATCTGCATGCGGGCATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTCATCAAGGCACTGGTGCAAATGACCATAGCTGGCAACAATGGCATGGGCAGCGCCTTGGCTGCAGCTTACACCTATGCAGCAGCGCTTCCACCGCCGCCGCCGCCACTGCAGCTCTTTGCGCAGCAGGCGACGTCAACGCAGTCGCATCAGAAGCCACCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGCACAACCAAAACAAGCAACAACAACAACAGCAACAGACACAACAACAACAACAACACATAAGCATACAACACAGCGTTAACCTTGCACCACCGAGTGGCAAACATGGCAAAATCCACACGGATATCTTCTTGAATCCACCGCCTCCACCAGCGCCACAGATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTGCAACATGCGCAACAGCACCAACAATCTCTTGCAGCCGGCAGCTATGCAGGTGCCAACTGCGCCAGCTCCTCTGCGACTTTGATGTCATCCACCTCCGTCGGACGCGCCAGCAACTGTCGCCAAACGAGCAATTCGCCTTTTGGTGCGCTCTTAAATGCCGCAGCGCAGGCCGCCTGCGCCTCGCCCGTTACCTCCAGTGCGTCTGTGCTGCGCTATGCCGAGTCACCAGTGGCCCACTATCTAGAGCGAGAGAATGGCGACTTTATAGTCCAGGAGACGCCCAAGCACATTGTCGAGTGCGTCGAGAAGGATGACGGCGAGTTCTCCGTGATTGAGCGCATCTATCAGTCGCCACCCAGCGTGCTGCACATACACGACGATGACGACGACGAGGAGGAGGACGAGGATGACAAGGGCTGGAACAGCGATGATGAGGATCACATGAAGGTGGAAGATCATGTAGAGGATGGCGACGACGAGCACGAGGATAGCCGCAGCCGAGTTGCACCCAAGACCACAACGAAAAAGTCACGCAAGACAAAAGCTAATGGAAGAAAGCACAAACGCGCCACCAAGCATCAGCCGGAAGATGAGGACAACTTTATGAGTCTAGGCAGCAGCTGTGCCGAAAGTGAACATCATGCAGAGCAGCAGCAGACTCAGGTGCAGCTGTCGCTTGCGTCCTCTTCGCCAGCTCAACTTAGCACGGCGCCTTCGACGAGCAGTGGAGCAGCTGCTGGTACTGTTGCCACCGCGTCCCCTTCCCCCACCTCTTCTGGCAGTGCCAATTCGACGCCCAGCGGCTCCACAAAGTCCAAAAAGAATCGAGTGACGGTGCTCAGCGATGTGCCGCTCAACATGAACGAGTATTTGGATCTGGTGGGCAACATTGTGGCATCAGGGCGCATTGGTGCAGCACGTCCGTTTGCTGCCGTGGCGCCCATACCGTTGGTCAAGGTGGAAAAGGAGGAGCCAATGGACGACTACGACACCCCGCCGCCAATGAAAGTGGAAGTGGAGCCAACGATGCTGCTGCCGCAACGCTTTTCAGCTCCGGCGCAGCAGCGTGGACCCAAGAAATTAGTCATCAAGCCAAAGGCCACAGCGACGGCAACGACAAAAAAGACTGAGAACAACGCTGCCGAAACAGCCAGCATATCAAAGGCGTCCACAGAGCTGGTGCAGGTGAAGAGCGAGAATGTGGAGGCAGCCGCAACAACAAGCGGCAGCATACTAGAGAAGCATCTGACTACCAGCTATGCGGCACAGCAGCAGGCGCGCAAACACTCTGCAGTCAATGATGATGATGCTCGCGTGCTGCTGGAGTTTGCCAATTCGAAGCAACTGCCGCTAGCGGGGAATAGCAACCAGACCACGTTTGTGGTAAATGCGGCCAGCTTTGCCTCGGCGGGCTCCGTATTTGCCAGCGGCAGCAGCGGCAGTGCGAAGAAGTCAAACAAGCCGGGCGACGAGTACATTCTGCCTGATGATAACAATCTGGAGGTGGATGAAATTGTGATATCCTCCTCCGAGGCCACCAATGCCGCCACGCTGGCCTCCTCCTCTAGCAATTCATCGGTTATGGATCAGGATTGCTCCATGAATGCCACGTTTCGCTTGGGCAAGCAACAATCCACATTGGCTGGCTGGTATCAGCCGCAGCAGCAGCAGCAGCCACAGGCAAGCAGTTCGCACAGCTGCCATGTGGAACAGTCGAGCCATTTTATTGCCGCACTCGCAGCCGTTGACTGCTGCAACAGTGTGGCGGGCGTTGATAGCGATGTCAAGTATTTGGATCTGGATACTTGCAAGCGGGAACAGTTAAGCAACAGCAGCAGCCATTTGCCTTCTGTATCCGCATCCGCATCGACAACATCCTCATCATTTGCGGCCGCCGCCACGGAGAGCAGTCTAGTGAGCGGCTTGGGCCTTAACATACGCACCGATGAGAAAATGCCCGCCAAGGGTGAAATCTCCGAGCAGGAAAGCAACTGCGATATTGAGAACTCCTGGAGTCAATCGATGTATGGTGACATATCACAGCGCTATTTTAGAAATCAGTTTACGGATGGCTATCATCAGCAGCTGGCTGATTGGCGTCACGATTCCTATCCGCCGCAGGACCTCAGTGGCCAGCAGCAGCAGCGTGAGCCAAAGCGCTTTGATTTCAACGCTGTCGCCTCGGAGTACGCGCAATCGGGCGAGCTGGACGCTTCCCCGAGCTCAAACAGACACAATCATTTGTTGGATGCACAGCCCACTGCTTCCTCGTCGTCATCGGCTTTGCTGGCTGGTCCACCAATAGCCTCGACGTCACGGGCTGCTGCCGAAGCGGAGGCCGTCGCTGCAGCGATGGCGCAACGAAAGCCACCGCGTCGCAAGATCTACAAGTGTCCGCACTGTGTGGTCATCTTTGAGAAGCTGAAGGAGCGCAATGCGCACATGATTGGCGAACACAACTATGTGCGCCAGAATCGACGACTCATCTGCACGCAGCCGCAGGTTGATGCCACAATGCTTGCACAGCCGCCGGCTCAGGAGCAGCAACAGCAGCTCCAGCAGCAAGTCCTGCTGCAGTCTGTGGGGCAAAGCAATGGCGATGTTGTGCATGAGGATTCCAAGGATGGTATTGTAAAAATCAAGCAGGAACACTGCCAAGATAAACAGGATTCATCGGAGCAGCTACTTGGCCAAATGGATATGCCTGACGTCAAGGATGCTGACCTGCTAGATGCCAGCGCTGATAATGGTCGCGATGCGGACATGAAGCCACCAGCCAACGTCTCAGAGCTGGACGAAAAGCCAGCCATAGCGCCGTTAGCCATGACCACACCAGCTGCCAAGCTGGCTGCTCTATATCGCATGCTCATTGCCTACAATGAGTCAAAGCTAGGCCAGGAGCGCAACAATCTCAGCGAGCTGGAGCAAAAGGCCATGGAGAAATCCATATTCCTCTGTTATGTGTGCCGCACCGATTTCCCCTCAGTAAAGCTGTACGATGCACATTTGACAGAGCATCCCGCTGAATGTTTCACCTGTGGCAAGAAATTCTATCGCTGGAAGAACTTTTCACTGCATTTGAAAAGGCATCTGGGCTGGAAGGAGTTCGGCTGTTATGTCTGCGACAAGAAGTTTGTGGTGCGCAGCGCGCTAGTGGAACACATGCGCATGCACACGGGCCAGACGCCGCTCAAGTGCAAGATATGCGGCAAAAAGTTCAAGCGCTATTCGAACTTGACACAGCATCGCAAGCGTCACACCAAAATGATGGTGCGCAAGAAGGAGTACGTGTGCCATTGTGGCGAGGTGTTGCCGTCCAAGGCGCGCTTCCTGTGGCACAAAGAGACCCACGACTTGAAGCCCAAGTGCTGTCCGTATTGCTGCGATCGTTTCGTACATGCCAATTCGCTGCGTAGGCACATTCGACTGGCCCATTCGGATAAGTTTGATTATGCCGAGCCGATGGAGTGTCCAATGTGCAAGCAGATCTTTGCCAAGACCTCCATCAAAGCGCACATGGCTACACATTCGACGGATCCGCAATACGATTGCGCCATATGCAACAAGAGCTTCTCAACCAAATGGAATCTGAAGATACATTCGTGGGTGCATGCGAATCGCACGGCCAAACCGTTTAAGTGCGAATACTGCCCCAAGGCGTTCGTTCGCGAGCTGGACTTCAAGAACCACATGAATGCCCATAAGCAGATCAAGCCCTACACCTGTGAGTATTGTGGCTGCAAGTTCATACGTAAATACAATTATATGCGGCATCGACGGGAGCATCATGGCAACAAGAAGTTCACCTGCGACCAGTGCGACAAGTCTTTTCATCGTCATTATTATCTGATCGAGCATCGGCGCATCCACACTGGAGAGCGTCCCTTCCATTGCACCATCTGCGGCAAGAGCTCGACGACAAAGACCAATCACAATAAGCATCTGAAGATACATCATTCGCGGGATCCTTTTACCGTCGAGGTTTAA
- Protein Sequence
- MVDCVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIAGNNGMGSALAAAYTYAAALPPPPPPLQLFAQQATSTQSHQKPPPAYGAAISQIRSQHNQNKQQQQQQQTQQQQQHISIQHSVNLAPPSGKHGKIHTDIFLNPPPPPAPQIXXXXXXXXXXXXXXXLQHAQQHQQSLAAGSYAGANCASSSATLMSSTSVGRASNCRQTSNSPFGALLNAAAQAACASPVTSSASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDDDEEEDEDDKGWNSDDEDHMKVEDHVEDGDDEHEDSRSRVAPKTTTKKSRKTKANGRKHKRATKHQPEDEDNFMSLGSSCAESEHHAEQQQTQVQLSLASSSPAQLSTAPSTSSGAAAGTVATASPSPTSSGSANSTPSGSTKSKKNRVTVLSDVPLNMNEYLDLVGNIVASGRIGAARPFAAVAPIPLVKVEKEEPMDDYDTPPPMKVEVEPTMLLPQRFSAPAQQRGPKKLVIKPKATATATTKKTENNAAETASISKASTELVQVKSENVEAAATTSGSILEKHLTTSYAAQQQARKHSAVNDDDARVLLEFANSKQLPLAGNSNQTTFVVNAASFASAGSVFASGSSGSAKKSNKPGDEYILPDDNNLEVDEIVISSSEATNAATLASSSSNSSVMDQDCSMNATFRLGKQQSTLAGWYQPQQQQQPQASSSHSCHVEQSSHFIAALAAVDCCNSVAGVDSDVKYLDLDTCKREQLSNSSSHLPSVSASASTTSSSFAAAATESSLVSGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFTDGYHQQLADWRHDSYPPQDLSGQQQQREPKRFDFNAVASEYAQSGELDASPSSNRHNHLLDAQPTASSSSSALLAGPPIASTSRAAAEAEAVAAAMAQRKPPRRKIYKCPHCVVIFEKLKERNAHMIGEHNYVRQNRRLICTQPQVDATMLAQPPAQEQQQQLQQQVLLQSVGQSNGDVVHEDSKDGIVKIKQEHCQDKQDSSEQLLGQMDMPDVKDADLLDASADNGRDADMKPPANVSELDEKPAIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00563356;
- 90% Identity
- -
- 80% Identity
- -