Dneo003002.1
Basic Information
- Insect
- Drosophila neocordata
- Gene Symbol
- -
- Assembly
- GCA_018903615.1
- Location
- JAEIGI010000009.1:4844103-4849163[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.4e-12 2e-08 33.9 0.0 1 40 600 640 600 643 0.90 2 4 3.5e-13 7.4e-10 38.5 0.1 2 39 655 692 654 695 0.94 3 4 2.2e-16 4.7e-13 48.7 0.0 1 45 709 754 709 754 0.98 4 4 1.2e-19 2.6e-16 59.1 0.0 1 43 761 804 761 805 0.97
Sequence Information
- Coding Sequence
- ATGGTGGTAAGGTACAGTGGACTGAAGAATGATAAGGAGGGTTTACTGCGCACCGCCGAGCAATTGAAAATTAAAGGACTCTGTGAGACAGCTGAAAATGCAGACGATTTGAATGATGCAGCAACTGCCACTATAACGGTGTCCGAAAATATACAACAGGCAGTTGTTGGTAACATAGTTAATGCAACCATAGTACCAGGCGAAGGCACCTCACCCACCGGAGTCGAACAGCAGCATCACCATCAACATCAAGTACAAAGTCAAACCCAGCAGGAGCAACAACAATTAAGCAACGCCTTCGGCAATACTGATAACCCATTGAGCGGGCAATTGCTAAGCTCGAGCAGTTCAATAAATGGTGAGACGGCATTACGGAAAACTCGTCCGAAACGTTCGAAGTCACCAGATTTACAACAGCAACAGGACCACCATCAGCAACAGCAAACAATTTTGATTCAGGGACAAAATCAGACATCGATTGTGAGTTTGCATCAGACAGTGGACGGCAATTATATACCCGTGAGTGCCGCAGGGCCGGGTGAAGAATCGGACGTGGATAACGATCAAGAACTCGATCACGTGCACGAGCACGACGAAGAAGTACATGAGAGTAAACCAAATAAAATTTGTAAAACAGAACAATCCCTGGTTTCACCCACATCGAATTCGTCCAATACTCCGACACACCATCAAAATGCTGCGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAATGGCGGCCTATTGGGCGTACCCATGGGTTTTCTGGATTTTACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAACACGTCGATCTCTCCTGTAATCCCAGCACAGATACGCGAGATCTATCAAATCCCACCGAACCGCTTGACATTGACAATCATTTGGCACAGCAAATCCATCGGCTCGATCAATCTCCCATGCATTCAATCGCCCATCATCACACTGGCGATGAGAGCAACTCGAATTTGGTGCAAGTTCAGCACATTAAAAGTGAAGTGATTGAAGCCAAACATTTATCGCTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGGATATTGGGGGTGCAACTGTTATGGAGATTGATCCGAGCCAGATAAAGCATGAGCCGGGTATGATAATAACGCCAGAGATTGTCAATATGATGTCCTCCGGTCATATGGATATGTATAATTCAGATACCAGCGAAGATTCTATGATGATTGCGAATGGCTCGCCGCACGATCAAAAGGAGCCGCACTACACGAATTTGGATCAAAAACATGGAATCCTTGGCGGCAGCAGCATTTGCGGCCCAGGTGGTGCTGGTGGTGGTAGTGGTGGTGTTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGTATACCATCGACCACCCTGTGGCAACGTGCTCATCGCCTAGGCATCGAAACGCCCAAGAAGGAGGGTGGCACGAAATCTTGGAACGAGGATGCTTTACAAAACGCCTTGGAAGCACTAAGAGCGGGTCAAATATCCGCCAACAAGGCATCAAAAGCTTTTGGGATACCCTCATCGACCTTGTACAAAATAGCACGACGCGAGGGCATCAGATTGGCAGCACCATTTAATGCCGCTCCAACTACATGGACACCAGAGGATTTGGAGCGTGCATTGGTAGCAATTAGAGCGGGTAATACGTCGGTGCAAAAAGCTAGTGCCGAATTTGGCATTCCCACAGGCACACTTTATGGACGCTGCAAACGTGAAGGCATTGAACTTTCACGATCGAATCCTACACCTTGGTCTGAGGATGCCATGAATGAAGCCTTGAACTCAGTTCGTGTTGGGCAAATGTCCATTAATCAAGCGGCCATTCATTATAACCTGCCCTATAGCTCACTCTACGGGCGTTTTAAGCGTGGGAAATACGATGTTGTAACTAATACAAGCGGAGTGTCGCTATTAAATACCTCAGGCAATACAACTGGAAGCATTGAGATTATTGAGCATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTTCCGTACAGTCCATCACCACATCCGCCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTATCAGCATCATGGTACGCCGGAGCGTAGTTGA
- Protein Sequence
- MVVRYSGLKNDKEGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGEGTSPTGVEQQHHHQHQVQSQTQQEQQQLSNAFGNTDNPLSGQLLSSSSSINGETALRKTRPKRSKSPDLQQQQDHHQQQQTILIQGQNQTSIVSLHQTVDGNYIPVSAAGPGEESDVDNDQELDHVHEHDEEVHESKPNKICKTEQSLVSPTSNSSNTPTHHQNAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQVQHIKSEVIEAKHLSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQKHGILGGSSICGPGGAGGGSGGVAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRAGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALVAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVTNTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00571056; iTF_00483605; iTF_00500962; iTF_00577698; iTF_00590887;
- 90% Identity
- iTF_00577698;
- 80% Identity
- -