Daus008078.1
Basic Information
- Insect
- Drosophila austrosaltans
- Gene Symbol
- -
- Assembly
- GCA_035045865.1
- Location
- JAWNOQ010000052.1:210834-217552[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 3.2e-08 33.8 0.0 1 40 634 674 634 677 0.90 2 4 4.5e-13 1.2e-09 38.4 0.1 2 39 689 726 688 729 0.94 3 4 2.8e-16 7.6e-13 48.7 0.0 1 45 743 788 743 788 0.98 4 4 1.6e-19 4.2e-16 59.1 0.0 1 43 795 838 795 839 0.97
Sequence Information
- Coding Sequence
- ATGGGCAGGACTGAAACTTCGACTACGAGTAAGAGTGGGATTGGGACGAGTACTAGAGATGGGGGTGGGTCCAGAGTTTCCCCTGCCCCTCATTTGTTGGTAAAGAGCGCGAGCATCTCATTCCGTTGCCCATTTGCCAACTGGGCTGGTTTGCTTCGCACCGCCgagcaattaaaaatcaaaggaCTTTGTGAGACAGCTGAAAATGCAGACGATTTAAATGATGCAGCAACTGCCACTATAACGGTGTCGGAGAACATACAACAGGCAGTTGTGGGTAATATAGTTAATGCAACAATAGTACCAGGCGAAGGCAACTCACCCACCGCAGTTgaacagcagcatcaacatcaacatcaggTACAAAGTCAAActcagcaggagcagcagcagttaaGCGCCGCCTTTGGCAATACCGACAACCCATTGAGCGGGCAATTGCTTAGCTCGAGCAATTCAGTGAATGGTGAGCCGCCATCAAGGAAATCTCGGCCGAAACGCTCGAAGTCTTCAGatttacaacagcaacaggaacaccatcagcaacagcaaacaatATTGATTCAGGGGCAAAATCAAACATCCATTGTGAGTTTGCATCAGACAGTGGACTGCAATTATATACCCGTGGGTGCCCCAGGGCCAGGTGAAGACTCGGACGTGGATAACGATCAAGAACTCGATCACGTGCACGAGCACGAGCACGACGAAGAGGTGCATGAGagtaaaccaaataaaatttgtaaaacagAGCAATCCTTGGTTTCACCCACATCAAATTCGTCCAATACTTCGACACACCATCAAAATGCTGCGGCCCCAGCTGGAGGCGTGAGCGGCAccggcaacggcagcagcagcggcataccaacagtaacagcagcagGCGGCCAAGCAGCCATTGTAACGCAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAATGGCGGCCTATTAGGCGTACCCATGGGTTTTCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACACCAGTCACCGTAACGGAACACGTCGATCTCTCCTGTAATCCCAGCACAGATACGCGAGATCTATCAAATCCCACCGAACCGCTTGACATTGACAATCATTTGGCGCAACAAATCCATCGACTCGATCAATCTCCCATGCATTCAATAGCTCATCATCATACTGGCGATGAGAGCAACTCGAATTTGGTACAAGTTCAGCACATTAAAAGTGAAGTGATTGAAGCCAAACATTTATCGCTAGcccagcatcagcagcagcaacatcaacaccaGCATGTCCACGTCCAGGCCCAACAGCATgcagccgctgctgctgccgctgctcatcatcagcagcaacagcaacaacatcttCATGCCCAGCAATTGTTGGCTGCTCAAAGTCAggcccagcagcagcaacaacaacaacaacaacaacaacaacagcagcagcagcaacaacaacaacatcaccagcagcaacagcaacaagcgGCGGCGGCAGCTGCAGCGGCTGCGGGAGTGCATGCTCAGCATGGAGGACATGTGACGCATTCGGATATTGGGGGGGCCACTGTTATGGAGATTGATCCGAGTCAAATAAAGCATGAGCCGGGCATGATAATTACGCCAGAGATTGTCAATATGATGTCCTCCGGTCATATGGATATGTATAATTCTGATACCAGCGAAGATTCCATGATGATTGCCAATGGCTCGCCGCACGATCAAAAGGAGCCGCACTATACAAATTTGGATCAAAAACATGGAATCCTTGGCGGCAGCAGCATTTGCGGCCCaggtggtgctggtggtggtggtagtggtggtgTTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGTATACCATCGACCACTCTGTGGCAACGTGCTCATCGCCTAGGCATCGAAACGCCCAAGAAGGAGGGTGGCACGAAATCGTGGAACGAGGATGCATTACAAAACGCCTTGGAGGCACTACGAGCGGGTCAAATATCCGCTAATAAGGCATCAAAAGCCTTTGGGATACCGTCATCGACCTTGTACAAAATAGCCCGACGCGAGGGAATTAGATTGGCAGCACCGTTTAATGCAGCTCCCACAACATGGACGCCGGAGGATTTAGAGCGCGCATTGGTAGCAATTAGAGCGGGTAATACGTCGGTGCAAAAAGCAAGTGCCGAATTCGGCATCCCCACAGGCACACTTTATGGACGCTGCAAACGTGAAGGCATCGAACTCTCGAGATCGAATCCTACACCATGGTCTGAGGATGCCATGAATGAGGCCCTGAACTCAGTTCGTGTTGGGCAAATGTCTATCAATCAGGCGGCCATTCATTATAACCTGCCCTATAGCTCACTCTATGGTCGCTTTAAACGTGGCAAATATGATGTTGTAACTAATACTAGTGGAGTGTCGTTATTAAATACCTCAGGCAATACAACTGGAAGCATTGAGATTATTGAGCATAGTCAGGAAAATTCGTTGCATATGTTACAACAACAGTTTCCGTACAGTCCATCACCGCATCCGCCAACGCCGCAGCATCATAGTACACCGCAACAGCATCACAGCAGCAGCTCCCAGCAAGGGCCGCCAACGCCGCAGcatatgcagcagcagcatgtgGTTCATATGCAGCAACAGTCACCACATCAGGTCCATCATCAGCATATGCAACAGGATGTGGTTACCTCAAGCAGCCAAGTAGTTCatggccaacagcagcagcttcaGCAGATTTATCAGCATCATGGTACGCCGGAGCGTAGTTGA
- Protein Sequence
- MGRTETSTTSKSGIGTSTRDGGGSRVSPAPHLLVKSASISFRCPFANWAGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGEGNSPTAVEQQHQHQHQVQSQTQQEQQQLSAAFGNTDNPLSGQLLSSSNSVNGEPPSRKSRPKRSKSSDLQQQQEHHQQQQTILIQGQNQTSIVSLHQTVDCNYIPVGAPGPGEDSDVDNDQELDHVHEHEHDEEVHESKPNKICKTEQSLVSPTSNSSNTSTHHQNAAAPAGGVSGTGNGSSSGIPTVTAAGGQAAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQVQHIKSEVIEAKHLSLAQHQQQQHQHQHVHVQAQQHAAAAAAAAHHQQQQQQHLHAQQLLAAQSQAQQQQQQQQQQQQQQQQQQQQHHQQQQQQAAAAAAAAAGVHAQHGGHVTHSDIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQKHGILGGSSICGPGGAGGGGSGGVAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRAGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALVAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVTNTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQQHHSSSSQQGPPTPQHMQQQHVVHMQQQSPHQVHHQHMQQDVVTSSSQVVHGQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555764;
- 90% Identity
- iTF_00500962;
- 80% Identity
- -