Dema015675.2
Basic Information
- Insect
- Drosophila emarginata
- Gene Symbol
- -
- Assembly
- GCA_037075365.1
- Location
- JBAMCD010000260.1:10387277-10391532[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 2.4e-08 33.9 0.0 1 40 593 633 593 636 0.90 2 4 4.6e-13 9.1e-10 38.5 0.1 2 39 648 685 647 688 0.94 3 4 2.9e-16 5.7e-13 48.7 0.0 1 45 702 747 702 747 0.98 4 4 1.6e-19 3.2e-16 59.1 0.0 1 43 754 797 754 798 0.97
Sequence Information
- Coding Sequence
- ATGGGCATCGACGGTTTGCTGCGGACCGCCGagcaattgaaaatcaaaggACTCTGTGAGACAGCTGAAAATGCAGACGATTTAAATGATGCAGCAACTGCCACTATAACGGTGTCGGAAAACATACAACAGGCAGTTGTGGGTAATATAGTTAATGCAACTATAGTACCAGGCGAAGGCAATTCACCCAGCGGAGTcgaacagcaacatcagcatcaacatcaacatcaacatcaggTACAAAGTCAAACccagcaggagcaacagcacTTAAGCGCCGCCTTCGGCAATACCGACAATCCATTGAGCGGGCAATTGCTAAGCTCGAACAGTTCAGTGAATGGTGAGCCGGCATCACGGAAAACTCGTCCGAAACGCTCGAAGTCACCGGatttacaacagcaacaggaacaccatcagcaacagcaaacaattttgattCAGGGGCAAAATCAAACATCTATTGTAAGTTTGCATCAGACAGTGGACGGCAATTATATACCAGTAAGTGCCGCAGGGCCGGGTGAAGAATCTGACGTGGATAACGATCAGGAACTCGATCACGTGCACGAGCACGAGCACGACGAAGAGCTGCATGAGagtaaaccaaataaaatttgtaaaacagAGCAATCACTGGTTTCACCCACATCGAATTCGTCCAATACTCCGACACACCATCAAAATGCTGCGGCCCCAGCTGGAGGCGTGAGCGGCAccggcaacggcagcagcagcggcataccaacaacatcagcagcaggcGGCCAAGCAGCCATCGTAACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAATGGCGGCCTATTGGGCGTACCCATGGGTTTTCTGGACTTTACACCCGAGCCACCAGCACCATCTGCTACACCAGTCACCGTAACGGAACACGTCGATCTCTCCTGTAATCCCAGCACAGATACGCGAGATCTATCAAATCCCACCGAACCGCTTGACATTGACAATCATTTGGCTCAACAAATCCATCGGCTCGATCAATCTCCCATGCATTCAATAGCCCATCATCATACTGGCGATGAGAGCAACTCGAATTTGGTGCAAGTTCAGCACATCAAAAGTGAAGTGATTGAAGCCAAACATTTATCGCTCGcccaacatcagcagcagcaacaccaacaccagcaTGCCCACGTCCAGGCCCAACAGcatgctgccgctgctgctgccgccgctcatcatcagcagcagcaacaacaacatcttcATGCCCAGCAGTTGTTAGCTGCCCAAAGTCAagcgcaacagcagcagcaacaacaacagcagcagcagcagcaacaacaacagcagcaacaacaacatcaccagcagcaacagcaacaagcggcggcagcagcagctgcagcggcTGCGGGGGTGCATGCTCAGCATGGAGGACATGTGACGCATTCGGATATTGGGGGCGCAACTGTTATGGAGATTGATCCAAGCCAGATAAAACATGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCTTCCGGTCATATGGATATGTATAATTCTGATACCAGCGAAGATTCCATGATGATTGCCAATGGCTCGCCGCACGATCAAAAGGAGCCGCACTATACGAACTTGGATCAAAAACATGGAATCCTTGGCGGCAGCAGCATCTGCGGCCcaggtggtgctggtggtggtagtggtggtgtTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGTATACCATCGACCACCCTGTGGCAACGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGTGGCACAAAATCGTGGAACGAGGATGCATTACAAAACGCTTTGGAAGCACTACGAGCGGGTCAAATATCCGCCAATAAGGCATCAAAAGCCTTTGGGATACCCTCATCGACCTTGTACAAAATAGCCCGACGCGAGGGCATCAGATTGGCAGCTCCATTTAATGCCGCTCCAACCACATGGACGCCAGAGGATTTGGAGCGCGCATTGGTGGCAATTAGAGCGGGTAATACATCGGTGCAAAAAGCAAGTGCCGAATTTGGCATTCCCACAGGCACACTTTATGGACGCTGCAAACGTGAAGGCATTGAACTCTCGCGATCGAATCCTACGCCATGGTCTGAGGATGCCATGAATGAGGCCTTGAATTCAGTTCGTGTTGGGCAAATGTCCATTAATCAGGCGGCCATTCATTATAACCTGCCCTATAGCTCACTCTACGGGCGTTTTAAGCGTGGAAAATACGATGTTGTAACTAATACAAGCGGAGTGTCGCTATTAAATACCTCAGGCAATACAACTGGAAGCATTGAGATTATTGAGCATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTTCCGTACAGTCCATCGCCGCATCCGCCAACGCCACAGCATCATAGCACACCGCAACAGCATCACAGCAGCTCGCAGCAAGGGCCGCCAACGCCACAGCatatgcagcagcagcatgtgGTTCATATGCAGCAACAGTCACCACATCAGGGCCATCATCAGCATATGCAACAGGATGTGGTTACCTCAAGCAGCCAAGTGGTACAtggtcagcagcagcagcttcagCAGATCTATCAGCATCATGGTACGCCGGAACGTAGTTGA
- Protein Sequence
- MGIDGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGEGNSPSGVEQQHQHQHQHQHQVQSQTQQEQQHLSAAFGNTDNPLSGQLLSSNSSVNGEPASRKTRPKRSKSPDLQQQQEHHQQQQTILIQGQNQTSIVSLHQTVDGNYIPVSAAGPGEESDVDNDQELDHVHEHEHDEELHESKPNKICKTEQSLVSPTSNSSNTPTHHQNAAAPAGGVSGTGNGSSSGIPTTSAAGGQAAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQVQHIKSEVIEAKHLSLAQHQQQQHQHQHAHVQAQQHAAAAAAAAHHQQQQQQHLHAQQLLAAQSQAQQQQQQQQQQQQQQQQQQQQHHQQQQQQAAAAAAAAAAGVHAQHGGHVTHSDIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQKHGILGGSSICGPGGAGGGSGGVAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRAGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALVAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVTNTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQQHHSSSQQGPPTPQHMQQQHVVHMQQQSPHQGHHQHMQQDVVTSSSQVVHGQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555764;
- 90% Identity
- iTF_00483605;
- 80% Identity
- -