Dpau005955.1
Basic Information
- Insect
- Drosophila paulistorum
- Gene Symbol
- -
- Assembly
- GCA_018152135.1
- Location
- JAECXG010000822.1:45849592-45855976[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.6e-12 2.3e-08 33.7 0.0 1 40 713 753 713 756 0.90 2 4 3.6e-13 8.5e-10 38.3 0.1 2 39 768 805 767 808 0.94 3 4 2.2e-16 5.4e-13 48.5 0.0 1 45 822 867 822 867 0.98 4 4 1.2e-19 3e-16 58.9 0.0 1 43 874 917 874 918 0.97
Sequence Information
- Coding Sequence
- ATGATGATGAGGAGGAGGAGGAGGCAGAGCAGGCAGAGAGATGAGTTTGGTGGCTTGCTCCAATGGGTAGAGGGTCTGCTACGTACCGCCGAACAATTGAAAATCAAAGGACTCTGTGAGACAGCTGAAAATGCAGATGATTTGAATGATGCGGCAACTGCCACAATAACAGTATCCGAAAATATACAACAATCAGTTGTTGGTAATATAGTTAATGCCACTATAGTACCCGGAGGAGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCTCAGCGTTTGGTCCATTGGGCGGGCAATTGTTAAGTACGAATAGTACAGTGAATGGTGAGCCGGCATCAAGAAAAACTCGTCCAAAACGTTCCAAATCCCCGGAACAACAGCAACAACAACAACACGAACACGAACACCATCAGCAACAGCAACAGACAATTTTAATTCAGGGGCAAAATCAAACATCAATTGTTAGTTTACATCAAACAGTCGATGGAAATTATATACCCGTGAACGCCACTGGGCCGGGTGACGAATCGGACGTGGATAACGATCACGAACTTGATCACGTGCATGAGCACGAACACGAACACGATCACGTGCACGACGAGGACGACGACGAAGACGTGCATGAGAGTAAACCAAATAAGATTTGTAAAACAGAACAATCACTTGTCTCGCCAACATCAAATTCGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGATTGAATGGCGGCCTATTGGGCGTACCCATGGGATTTCTGGACTTTACACCCGAACCACCAGCACCATCAGCCACACCAGTCACTGTAACGGAACATGTCGATATCTCCTGCAATCCAAGCACAGATACGCGAGATCTATCAAATCCCACCGAACCGCTTGACATTGACAATCATTTGGCGCAACAAATCCATCGGCTCGATCAATCTCCCATGCATTCAATAGCCCATCATCATACGGGCGATGAGAGTAATTCGAATTTGGTGCAAGTGCAGCATATAAAAAGTGAAGTAATTGAGGCGAAACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGGACATGTGACGCATGCGGATATTGGTGGCGCAACTGTCATGGAGATTGATCCGAGCCAGATAAAGCATGAACCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCGTCCGGTCATATGGATATGTACAATTCAGATACCAGCGAGGATTCCATGATGATTGCCAATGGCTCACCGCACGATCAAAAGGAGCCGCACTATACGAATTTGGATCAGAAACACGGAATACTTGGCGGCAGCGGAATTTGCGGTCCGGGTGGTGCTGGTGGTGGTGGTGGTAGTGGTGGTAATGGTGGTGGTGTGGCTGGTGGTGTTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCCGCCATATATGGTATACCATCGACCACCCTTTGGCAACGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACAAAATCATGGAACGAGGATGCATTACAAAATGCCTTGGAGGCATTACGTGCGGGTCAAATATCCGCCAATAAGGCATCGAAAGCCTTTGGTATACCCTCATCGACACTGTACAAAATTGCCCGACGTGAGGGCATCAGATTGGCAGCACCATTCAATGCTGCACCAACAACATGGACGCCGGAGGATTTGGAACGGGCATTGGTGGCAATTCGAGCGGGTAATACATCGGTGCAAAAAGCAAGTGCCGAATTTGGCATACCAACAGGCACTCTTTATGGACGCTGCAAACGCGAGGGGATTGAATTGTCGCGTTCAAATCCTACACCCTGGTCTGAGGATGCCATGAACGAGGCCCTGAACTCAGTTCGCGTTGGCCAAATGTCAATCAACCAGGCGGCCATTCATTATAACCTGCCCTATAGTTCACTCTATGGGCGCTTTAAGCGTGGCAAATACGATGTTGTGGCCAATACCAGCGGAGTTTCGCTATTGAATACCTCAGGCAATACAACTGGAAGCATTGAGATTATTGAGCATAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTTCCATACAGTCCGTCACCGCATCCACCAACGCCCCAGCATCATAGTACACCGCAACAGCATCACAGCAGCTCGCAGCAAGGACCACCAACGCCACAGCATATGCAGCAACAGCAGCAACAGCATGTGGTCCATATGCAGTCGCCACATCAGGGTCATATGGCAACGGGTCATATGCAACAGGATGTGGTTACCTCAAGTAGCCAAGTGGTGCACGGCCAGCCGCAGCAGCTTCAACAGATCTATCAGCATCATGGTACGCCAGAGCGTAGTTGA
- Protein Sequence
- MMMRRRRRQSRQRDEFGGLLQWVEGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQSVVGNIVNATIVPGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSAFGPLGGQLLSTNSTVNGEPASRKTRPKRSKSPEQQQQQQHEHEHHQQQQQTILIQGQNQTSIVSLHQTVDGNYIPVNATGPGDESDVDNDHELDHVHEHEHEHDHVHDEDDDEDVHESKPNKICKTEQSLVSPTSNSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGKDTKNMTSLGMGLNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDISCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQVQHIKSEVIEAKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQKHGILGGSGICGPGGAGGGGGSGGNGGGVAGGVAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRAGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALVAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQQHHSSSQQGPPTPQHMQQQQQQHVVHMQSPHQGHMATGHMQQDVVTSSSQVVHGQPQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555764;
- 90% Identity
- -
- 80% Identity
- -