Dmal006246.1
Basic Information
- Insect
- Drosophila malerkotliana
- Gene Symbol
- -
- Assembly
- GCA_018153235.1
- Location
- JAECXV010000075.1:18248529-18253746[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.8e-12 1.7e-08 33.8 0.0 1 40 640 680 640 683 0.90 2 4 4.8e-14 9.6e-11 41.1 0.1 2 39 695 732 694 735 0.94 3 4 9.7e-18 1.9e-14 52.9 0.0 1 45 749 794 749 794 0.98 4 4 1.1e-19 2.3e-16 59.1 0.0 1 43 801 844 801 845 0.97
Sequence Information
- Coding Sequence
- ATGACCACCGAATCTTATGTGAAAAGCTTACAAATTAGACTAATCCTGATCTTCTCCTTGGAATCCTTGCAGGGCCTCTTGCGCACCGCCGAGCAGCTGAAAATCAAAGGACTTTGCGAGACTGCGGAGAACGCGGATGACCTGAACGACGCGGCCACAGCGACGATAACCGTGTCGGAGAACATCCAGCAGGCGGTTGTGGGCAACATAGTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCGCCATCCCCCTAGCCGGACAGCTACTGAGCTCCACGGCCAACAGTGGCAGCTCTGCCGGCGGACAGTCAGCATCGGGCCTGCAGCCCACGCCCCGCAAGTCGCGGCTCAAGCGATCCAAGTCGCCCGACTTGCAGCTACCCCCCGGCGGATCTAGTTCCGGAGCGGGATCGAGCGGCTCGTCGCAACAGCAACCCCAGCCGGCGCACCACCACTCGCAAACGATTCTCATCCAGGGCCAGAACCAGGCATCCATTGTAAGCCTGCAGCAGACGCCCGACGGCAACTACATACCAGTGTCCGGGAACGGTGACGAATCGGACACCGAGAACGATCACGATCACGGCGGACAAGGACACGGACACGGCGGACACCAGCAGCACGGCGGACACGACCACGAACACTCGCACTCGCATTCGCATCCACACTCGCACGACCACGAGCACGAGAACAAGCCGAACAAGATCTGCAAGACGGAGCAGTCGGTGGCCTCGCCGGCATCCAATTCATCCGGCGCCTCGAACAATGCTGCGGGCGTGAGCGGCGTCACATCCTCCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGTCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTCACGGAACATGTCGATCTGTCCTGCAATCCCAGTACGGACACACGCGATCTATCAAACCCCACCGAACCGCTCGACATAGACAATCACCTGGCCCAGCAGATCCATCGGCTCGACCAGTCCCCCATGCACTCCATCTCGCACCACCACGGCGACGAAAGCAACTCCAATCTGGTGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGGACATGTGTCGCACGCCGATATCGGTGGCGCCACCGTCATGGAAATCGACCCGAGCCAGATCAAGCACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCACGGGGCACATGGACATGTACAACTCGGACACGAGCGAGGACTCTATGATGATCGCCAACGGCTCGCCGCACGATCAAAAGGAGCCGCACTACACGAATTTGGATCAGCAGCACGGTGGTCTGGGGGGCAGCGTGTGCGGGCCGGGGCCCGGCGGTGCTGGTGGCGGTGGGGGCATGGGTGGTGGTGCTGGCTCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACTTTGTGGCAACGCGCTCATCGGCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCCTGGAACGAGGATGCTCTCCAGAATGCTTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATCGCCCGGCGGGAGGGCATACGCCTGGCGGCTCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGATGATCTGGAGCGCGCCTTGGAGGCGATACGGGCGGGCAATACATCGGTCCAGAAAGCCAGTGCTGAGTTTGGCATACCTACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATCGAGCTATCGCGCTCGAATCCAACACCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTATATGGACGCTTCAAGCGGGGCAAGTACGACGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGCCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCCTCGCCGCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCACCACAGCACGCCCCAGGGACCACCGACGCCGCAGCACATGCAGCAGCAGCACGTGGTCCACATGCAACAGCAGCAGCAGCAGTCGCCCCACCCGGGACACCATCCGCAACACATGCAACAGGACGTGGTGACATCGAGCAGTCAGGTGGTGCACAGCCAGCAGCAGCAGCTCCAGCAGATCTATCAGCACCACGGAACGCCGGAGCGTAGTTGA
- Protein Sequence
- MTTESYVKSLQIRLILIFSLESLQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAIPLAGQLLSSTANSGSSAGGQSASGLQPTPRKSRLKRSKSPDLQLPPGGSSSGAGSSGSSQQQPQPAHHHSQTILIQGQNQASIVSLQQTPDGNYIPVSGNGDESDTENDHDHGGQGHGHGGHQQHGGHDHEHSHSHSHPHSHDHEHENKPNKICKTEQSVASPASNSSGASNNAAGVSGVTSSGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVSMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHGDESNSNLVHIKSEVIEAKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHVSHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGLGGSVCGPGPGGAGGGGGMGGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQGPPTPQHMQQQHVVHMQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00487920;
- 90% Identity
- iTF_00487920; iTF_00475856; iTF_00566001; iTF_00579902; iTF_00615486;
- 80% Identity
- -