Dvar000781.1
Basic Information
- Insect
- Drosophila varians
- Gene Symbol
- -
- Assembly
- GCA_018150405.1
- Location
- JAECWK010000130.1:5137353-5143248[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.9e-12 1.7e-08 33.8 0.0 1 40 644 684 644 687 0.90 2 4 4.9e-14 9.3e-11 41.0 0.1 2 39 699 736 698 739 0.94 3 4 1.1e-17 2.2e-14 52.7 0.0 1 45 753 798 753 798 0.98 4 4 1.2e-19 2.2e-16 59.0 0.0 1 43 805 848 805 849 0.97
Sequence Information
- Coding Sequence
- ATGTTTCTGAAAAAGAATTTTGGACTAACTTCCGACCCTTTGCTTGAATCCTTGCAGGGCCTCTTGCGCACCGCCGAGCAACTGAAAATCAAAGGACTCTGCGAGACAGCCGAGAACGCGGACGACCTGAACGACTCGGCCACGGCGACGATAACCGTGTCGGAGAACATCCAGCAGACGGTTGTGGGCAATATAGTGAATGCCAGCATAGTTCCCGGGGCTCCGTCACCCTCCCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGGGAGGACTGCTATCCCAGCACGGAGTGAGCGTGCCCCTAGCCGGACAGCTACTGAGCTCCACGGCCAGTAGTGGCAGCTCTGCCGGCGGACAGTCAGCGTCCGGATTGCAGCCGACTCCTCGCAAGTCGCGGCTAAAGCGTTCCAAGTCGCCGGACTTGCAGCTACAACCCGGCGGAAGCAGCTCCGGAGCGGGAGCCAGTGGCTCGGGCCAGCAACAGCAGCCGCAGCCGGCGCACCATCACTCGCAGACGATTCTCATCCAGGGCCAGAACCAGGCCTCCATTGTGAGCCTGCAACAGACGGCCGACGGCAATTACATACCAGTGGCCGGGAACGGCGACGAGTCCGACACCGAGAACGATCACGAGCACGGCCACGGACACGGCGGACACCAGCAGCACGGCGGACACGACCACGAGCACGCCCACTCGCATCCACATCCACATTCGCATTCGCATTCGCATCCGCATCCGCACGACCACGAGCACGAGAATAAGCCGAACAAGATCTGCAAGACGGAGCAGTCGGTGGCCTCGCCGGCATCCAATTCATCCGGCGCCTCGAACAATGCTGCGGGCGTGAGCGGCGGCGTCACATCCTCCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGTCCATGGGCTTCCTGGACTTCACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTCACGGAACACGTCGACCTCTCCTGCAATCCCAGCACGGACACACGCGATCTATCAAACCCCACCGAACCGCTCGATATAGACAATCACCTGGCCCAGCAGATCCACCGGCTCGATCAGTCCCCCATGCACTCCATCTCGCATCACCACACCGGCGACGAGAGCAACTCCAACCTGGTGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACCTGGCGGCTGCCCAGCAGCATGCCCTTAGCCAGGCCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGGGGTGCACGGCCAGCATGGGGGACATGTGTCGCATGCCGATATCGGTGGCGCCACCGTCATGGAGATCGATCCGAGTCAGATCAAGCATGAGCCGGGCATGATCATCACGCCAGAGATTGTCAACATGATGTCCTCGGGGCATATGGACATGTACAATTCGGATACGAGCGAGGACTCGATGATGATCGCCAATGGCTCGCCGCACGATCAAAAGGAGCCGCACTACACGAACTTGGATCAGCAGCACGGCGGTCTGGGGGGCAGCGTGTGCGGGCCGGGGCCCGGTGGTGCTGGTGGCGGTGGGGGCATGGGTGGTGGTGCTGGCTCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCTTGTGGCAACGCGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGAACCAAGTCCTGGAACGAGGATGCTCTGCAGAATGCTTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCATCCAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATCGCCCGGCGCGAGGGCATCCGCCTGGCGGCTCCCTTCAATGCCGCCCCAACCACATGGACGCCCGAGGACCTGGAGCGCGCCTTGGAGGCGATAAGGGCGGGCAATACATCGGTCCAGAAAGCCAGTGCTGAGTTTGGCATACCCACAGGAACACTCTATGGACGCTGCAAGCGGGAGGGCATTGAGCTGAGCCGCTCGAATCCGACACCTTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCGGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTCTACGGACGCTTCAAGCGCGGCAAATACGATGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCCGGCAACACCACCGGCAGCATTGAGATTATCGAACATAGCCAGGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGCCCGTCGCCGCATCCGCCAACGACGCAGCATCACAGCACGCCGCAGCACCACAGTACGCCCCAGGGACCACCGACGCCGCAGCACATGCAGCAGCAGCACGTGGTCCACATGCAACAACAGCAACAGCAGCAGCAGCAGTCGCCCCATCCGGGACACCATCCGCAGCACATGCAGCAGGATGTGGTGACATCGAGCAGCCAGGTGGTGCATAGCCAGCAGCAGCAGCAGCTCCAGCAGATCTATCAGCACCACGGAACGCCGGAGCGAAGTTGA
- Protein Sequence
- MFLKKNFGLTSDPLLESLQGLLRTAEQLKIKGLCETAENADDLNDSATATITVSENIQQTVVGNIVNASIVPGAPSPSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGLLSQHGVSVPLAGQLLSSTASSGSSAGGQSASGLQPTPRKSRLKRSKSPDLQLQPGGSSSGAGASGSGQQQQPQPAHHHSQTILIQGQNQASIVSLQQTADGNYIPVAGNGDESDTENDHEHGHGHGGHQQHGGHDHEHAHSHPHPHSHSHSHPHPHDHEHENKPNKICKTEQSVASPASNSSGASNNAAGVSGGVTSSGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVSMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVHIKSEVIEAKHLAAAQQHALSQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVHGQHGGHVSHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGLGGSVCGPGPGGAGGGGGMGGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTTQHHSTPQHHSTPQGPPTPQHMQQQHVVHMQQQQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00538878;
- 80% Identity
- -