Dpse013467.1
Basic Information
- Insect
- Drosophila pseudoananassae
- Gene Symbol
- -
- Assembly
- GCA_018153035.1
- Location
- JAECXR010000001.1:18553143-18562467[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-12 1.7e-08 33.8 0.0 1 40 655 695 655 698 0.90 2 4 4.3e-14 9.6e-11 41.0 0.1 2 39 710 747 709 750 0.94 3 4 8.6e-18 1.9e-14 52.9 0.0 1 45 764 809 764 809 0.98 4 4 1e-19 2.3e-16 59.0 0.0 1 43 816 859 816 860 0.97
Sequence Information
- Coding Sequence
- ATGGGCCCGCCATTGTCTTTGATAGCAGGGGCCCGGGGTGTGGCCGGCCAGGGGCAGGAGGTCCCTGGTATGGGTAGCATCCTGGGTTGCCCATTTGCCAACTGGGCTGGCCTCTTGCGCACCGCCGAGCAGCTGAAAATCAAAGGACTTTGCGAGACTGCGGAGAACGCGGATGACCTGAACGACGCGGCCACAGCGACGATAACCGTGTCGGAGAACATCCAGCAGGCGGTTGTGGGCAACATTGTGAATGCCACCATTGTTCCCGGGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGGCCTGCAGCCCACGCCCCGCAAGTCGCGGCTCAAGCGTTCCAAGTCGCCCGACTTGCAGCTACCCCCCGGCGGATCTAGTTCCGGAGCGGGATCGAGCGGCTCGTCGCAACAGCAACCCCAGCCGGCGCACCACCACTCGCAAACGATTCTCATCCAGGGCCAGAACCAGGCCTCCATTGTAAGCCTGCAGCAGACGGCCGACGGCAACTACATACCAGTGTCCGGGAACGGTGACGAATCGGACACCGAGAACGATCACGAGCACGGCGGACAAGGACAAGGACACGGACACGGCGCACACCAGCAGCACGGCGGACACGACCACGAACACTCGCACTCGCATTCGCATCCACACTCGCACGACCACGAGCACGAGAACAAGCCGAACAAGATCTGCAAGACGGAGCAGTCGGTGGCCTCGCCGGCATCCAATTCATCCGGCGCCTCGAACAATGCTGCGGGCGTGAGCGGCGTCACATCCTCCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGTCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTCACGGAACATGTCGATCTGTCCTGCAATCCCAGTACGGACACACGCGATCTATCAAACCCCACCGAACCGCTCGACATAGACAATCACCTGGCCCAGCAGATCCACCGGCTCGACCAGTCCCCCATGCACTCCATCTCGCATCACCACGGCGACGAAAGCAACTCCAATCTGGTGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGAGTGCACGGCCAGCATGGGGGACATGTGTCGCACGCCGATATCGGTGGCGCCACCGTCATGGAGATCGACCCGAGCCAGATCAAGCACGAGCCGGGCATGATCATAACGCCAGAGATTGTCAACATGATGTCCACGGGGCACATGGACATGTACAACTCGGACACGAGCGAGGACTCTATGATGATCGCCAACGGCTCGCCGCACGATCAAAAGGAGCCGCACTACACGAATTTGGATCAGCAGCACGGTGGTCTGGGGGGCAGCGTGTGCGGGCCGGGGCCCGGCGGTGCTGGTGGCGGTGGGGGCATGGGTGGTGGTGCTGGCTCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACATTGTGGCAACGCGCTCATCGGCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCCTGGAACGAGGATGCTCTCCAGAATGCTTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTCGGCATCCCCTCCTCGACGCTCTACAAGATCGCCCGGCGGGAGGGTATACGCCTGGCGGCTCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGATGATCTGGAGCGCGCCTTGGAGGCGATACGGGCGGGCAATACATCGGTCCAGAAAGCCAGTGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATCGAGCTATCGCGCTCGAATCCAACACCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTATATGGACGCTTCAAGCGCGGCAAGTACGACGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGCCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCCTCGCCGCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCACCACAGCACGCCCCAGGGACCACCGACGCCGCAGCACATGCAGCAGCAGCACGTGGTCCACATGCAACAGCAGCAGTCGCCTCACCCGGGACATCATCCGCAGCACATGCAACAGGACGTGGTGACATCGAGCAGTCAGGTGGTGCATAGCCAGCAGCAGCAGCTCCAGCAGATCTATCAGCACCACGGAACGCCGGAGCGTAGTTGA
- Protein Sequence
- MGPPLSLIAGARGVAGQGQEVPGMGSILGCPFANWAGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGLQPTPRKSRLKRSKSPDLQLPPGGSSSGAGSSGSSQQQPQPAHHHSQTILIQGQNQASIVSLQQTADGNYIPVSGNGDESDTENDHEHGGQGQGHGHGAHQQHGGHDHEHSHSHSHPHSHDHEHENKPNKICKTEQSVASPASNSSGASNNAAGVSGVTSSGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVSMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHGDESNSNLVHIKSEVIEAKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVHGQHGGHVSHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGLGGSVCGPGPGGAGGGGGMGGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQGPPTPQHMQQQHVVHMQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00487920;
- 90% Identity
- iTF_00538878;
- 80% Identity
- -