Dhop005434.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
tfip11
Assembly
GCA_033060865.1
Location
CM065419.1:31839874-31847500[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.5e-95 1.4e-90 305.1 10.5 1 275 400 671 400 671 0.97
2 2 0.26 6.9e+03 -2.1 0.0 244 271 685 712 676 716 0.75

Sequence Information

Coding Sequence
ATGTCAGAAGACGAAGTGGAAAAGTTCGAGATAACCGACTATGACTTAGAAAACGAATTCAACATAAACAGACCCCGCCGACGACCCACCAAGCATCAACAAATTTATGGTATTTGGGCGGACGAGAGTGATAATGAAGCCGACGCTAGGCCGTCGTTTAAATCCAGTAAACTCCCGAAGAATTATTCAGCCCCTATTGGCTTCGTGGCGGGTGGTGTACAGCAAGCGgggaagaaaaaggaaaagaatgCTGACGGTACAAAGAAAGAAAGTGATGATTCTGAGAATGAGGGACCATCAACATCGTTCAAAATCAGAAATAGTTCCAGTGATTCTGATGATGAATCTATCAGACGTCGAGGATTTGGCAGTCAAAAGTCGAGCACACAATCTGTGGTAACTGAAGTCACACAAGACATCGCaggtttaagaaataaaagaacTCCTGTTAATAATACATTAATTAATCAAGGAGTGGGAAATTGGGAAAAACATACTAAAGGCATCGGTGCAAAACTGTTATTGCAAATGGGCTTTCAACCAGGCAAAGGTTTGGGCAAAGATCTTCAAGGTATTCATACCCCTGTTGAGGCCCACCTAAGGAAAGGAAGAGGCGCAATAGGAGCTTATGGACCAGAGAAAGCTGCATCTGTGCCAATAAGAAAGGAAAAAGGAGAACCACGTGATGTAGATATTGTGGATGATGAATCCAGATGGAAGAAAAGTGATATGAACAAAAAGAAATCTCGCTATTACTACAGGAGTGTCGATGATGTAATTGAAAAAGGTAAACGTACTGGAGCATATAGAAATTCGGGCCCTGCAAGTGAATTAAGCAAAGTGAAAGTAATAGATATGACAGGCCCGCAACAAAGAGTCTTAAGTGGATATCATGCTTTAAGTGGATTAAAAGCTCCAACCGGGGTTGAAAGATACGAAGACGTCATTCACAAAAAATGCACAAATTTTGCTTTGCCTGAAATTCAACATAATCTAGATGTACTAGTAGATTTATGTGAACAGGATATAATACGTATTGACAGAAGCACAAGATATAACCAAGACCATTTGATAACTCTGCGACAAGAAGAACTCACTCTAAAAAGCCTCATCAATAAAGAAGACTGCgtaatcaataatttaaattctgttTTGCAAGTAGTCAACAAATTAATGGATCACTCGCAAGGGCTTTCTTTGGGACAAGTTGCtcaaatttttaaagatttacaGGAAAATCATTATGAGGAATACTGTCAATATGAACTAGGAGAATTAGCCCCTGGTTTAGTTGGTCCTCTTTTAACATCAGGATTAGCAAGTTGGTCACCATTAACAGCGCCAGCTCAATACAGGGATGTTTTTGACCAGTGGAAGGATATATTAGAAAAACCTAGACAACGTGGGACACTAGAAGGTAATTGTATGGGGATTCAGCCGTATGATAGTCTCTTATGGCACACTTGGGTGCCTGTTATCAGATCATGTGTTAGTTCTTGGAATCCACGTGACTGTGATCCTTTAATTACCctcttagaaatttggaaacCGCTACTTTCACAGTGGGTATTGGATAATGTTCTGGACCGATTAGTCATGCCTAAAATAACATCCGAGGTGGCTAAATGGGATCCACTCACAGACACCATACCGATTCACACATGGATTCATCCGTGGATACCACTTTTAgattttagGCTGCAGACAAATATATATCCCATGATACAAGAAAAATTAGGGGCTGCACTGGCAAATTGGCATCCATCTGACAGATCTGCAAAATTAATGCTTAAACCCTGGCAAAGAGCACTACCTGAGGGATCTTTTGTTGCTTTCCTTGTAAAACATATTGTGCCGAAATTACAACTCTGTATGCAATCACTTGTCATAAATCCACATCAACAACATTTAGatgcTTGGCACTGGGTAATGGATTGGAGTGACATGTTATCTTTGGGAAACCTGACATTAATATTAGATAAATATTTCTTTCCACGCTGGTTGCAAACACTTGCGATGTGGCTAAATCATAATCCGGATTACTCGCAAGTTACAGAATGGTACTCAGGCTGGAAAAGAATGATATCAGATCCACTTTTAGCTCAGCCAACAATTAAAGACAATTTCCATAAGGCATTAGAAATGATGAACAGAGCAGTAAGTACCGGCCATCAACCCGGTGCGAAAGAATCTGTTTCATATTTAACAACGATTGAAACTAATGTACCGCCACCTCCACCACCACCGAGAATAGAAaGCCTAGCAGAAGCTGTAAGATCTGCAAGCCAAATCCCTCAAGGATTTAAAGATCTTATTGCAAAGCGATGTGAAGAAAgaggaattttgtttgttccaATTCCCAATAAGTATCACGAAGCGAAACAAGTCTATAGGTTAGGCACTAATGGTTTACAGTGTTACATTGACCGCAGCGTTGTCTTTTACACTCACAGTAATTCTTCTACTTGGGTACCCACATCGTTGAACAGATTATTAGACATGGCTTAA
Protein Sequence
MSEDEVEKFEITDYDLENEFNINRPRRRPTKHQQIYGIWADESDNEADARPSFKSSKLPKNYSAPIGFVAGGVQQAGKKKEKNADGTKKESDDSENEGPSTSFKIRNSSSDSDDESIRRRGFGSQKSSTQSVVTEVTQDIAGLRNKRTPVNNTLINQGVGNWEKHTKGIGAKLLLQMGFQPGKGLGKDLQGIHTPVEAHLRKGRGAIGAYGPEKAASVPIRKEKGEPRDVDIVDDESRWKKSDMNKKKSRYYYRSVDDVIEKGKRTGAYRNSGPASELSKVKVIDMTGPQQRVLSGYHALSGLKAPTGVERYEDVIHKKCTNFALPEIQHNLDVLVDLCEQDIIRIDRSTRYNQDHLITLRQEELTLKSLINKEDCVINNLNSVLQVVNKLMDHSQGLSLGQVAQIFKDLQENHYEEYCQYELGELAPGLVGPLLTSGLASWSPLTAPAQYRDVFDQWKDILEKPRQRGTLEGNCMGIQPYDSLLWHTWVPVIRSCVSSWNPRDCDPLITLLEIWKPLLSQWVLDNVLDRLVMPKITSEVAKWDPLTDTIPIHTWIHPWIPLLDFRLQTNIYPMIQEKLGAALANWHPSDRSAKLMLKPWQRALPEGSFVAFLVKHIVPKLQLCMQSLVINPHQQHLDAWHWVMDWSDMLSLGNLTLILDKYFFPRWLQTLAMWLNHNPDYSQVTEWYSGWKRMISDPLLAQPTIKDNFHKALEMMNRAVSTGHQPGAKESVSYLTTIETNVPPPPPPPRIESLAEAVRSASQIPQGFKDLIAKRCEERGILFVPIPNKYHEAKQVYRLGTNGLQCYIDRSVVFYTHSNSSTWVPTSLNRLLDMA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01258023; iTF_00466196; iTF_00068046; iTF_00434113; iTF_01498884; iTF_01120871; iTF_00956307; iTF_01123720; iTF_00307897; iTF_00740831;
90% Identity
iTF_01258023; iTF_00466196;
80% Identity
-