Dang007591.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ditula angustiorana
Gene Symbol
-
Assembly
GCA_963691745.1
Location
OY829474.1:9478733-9486468[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0015 0.097 13.9 1.3 2 23 201 223 200 223 0.94
2 12 1.1 70 4.8 0.2 5 23 232 250 231 250 0.94
3 12 0.0085 0.53 11.5 5.5 1 19 284 302 284 307 0.90
4 12 0.27 17 6.8 0.6 5 23 316 334 314 334 0.94
5 12 0.0013 0.082 14.1 0.5 2 23 341 362 340 362 0.96
6 12 1.3e-05 0.00081 20.4 0.5 1 23 370 392 370 392 0.97
7 12 0.0012 0.073 14.2 2.0 1 23 401 424 401 424 0.97
8 12 0.00032 0.02 16.0 0.2 1 23 430 452 430 452 0.97
9 12 2.4e-06 0.00015 22.7 1.9 1 23 458 480 458 480 0.97
10 12 0.00032 0.02 16.0 0.6 1 23 485 507 485 507 0.98
11 12 4.2e-06 0.00027 21.9 4.2 1 23 513 535 513 535 0.97
12 12 0.0015 0.093 13.9 2.0 2 23 542 564 541 564 0.95

Sequence Information

Coding Sequence
ATGACAAGCTTGAGAGACTTATGTAGACTGTGTGCTAAAAAAGACGAGTTTAGTAAAGATTTACTGGATGTAAAcaacaaaaatgtattaaatctCATCAGAGACTTTATCCAGATAACTGTCAATGAACTAGAAGACCTACCAACAAAAATATGTCTGAATTGTGAAGAGAAAATGGTGTCCTTTCAATTGTTTGTACTGGAGTGTTATAAAGTTCAAGAAGACTTCAGGAAACAAGTGGACAAAGTTGAACTGCAAATTGGCCCTGAATCGGACATTAAGCTTGAGATTAGCAATCCTTACTATGCAGTGCCTTTGATAAAATCAGAGGTGAAAGATGAATTGACTGCTGAGGATATTGTATGTGCAATCACAGCAAATGACCCATCACTGTCAGAATTTGAAGCAGTTGATTACAATGATGGTGGtgttcatgatgatgatgatgatgatgatgacctggACGACATAGCAATAGCTTCACTCAAAGACTTCAAGACAAAGagaattaaaagaaaagttGTGTCAGAGGAAGATTCTGTTAAATTTAGTGAAATTTTAAAACAGCCTAACTTGAAAGTGAAGGATTTTGTTAAGTTAACATGTCACATATGTGAAGCAGAGTCTAAGACGTGGAGTAATTTGCGCATTCATTACTTTAAAACACATAGAAGTAAGGCTGTGGCCTATTGCATCTGCGGCTACGCCATCAGGTCCAAGAGTGTGCTGTACAAGCATGTGTCTCAGCATAAGATGGAAAGCAGGAAGATAAGAAGAGCCGCGGACTTGTTGGAGGAAAAACAAGAGGATTCAAAGTATTCAaacttaaatgttaaaaactttgtaaaTTTTACTTGCAGTACCTGTCAAAAGGTATGTTCCAGTTGGTACAGTTTGAAGTCACACTGCGAGAGGGTACACAATACTTTGCCCATAGTGCACTGTATATGTGGAATTGCTCTTAAATCCAAATCTGTACTTTACAAACACATACAGGATCACAAAAATCCAAATGTGTTATCGTGTGACAAGTGCCCTCGAATAACTAAAACATTAGCAgcattaaataaacataaaatgagACATGTACCGAAATCAGAAAGAAAGTTCGCATGTGACTCTTgcgataaaatatttaacacgaAAGATGCTTTGAAATCTCACGAGAGGTCGCACATACCAATAGAAGACAGGAAAATATATCATTGTGATATGTGTAATATGAAgtttactACGCGTTCGTCGGCCGCGTCGCACAAGCGTGTCGTCCACGACAAAATCAAGAGCTACGTGTGCGACTTGTGTGGCTACGCGTGTGGGACCAACGGCGAGCTGCGGCAGCACCGCGCCATTCACAGCGACGACAAGCCTTTCGTCTGCAGGAAGTGTTCCAAACcTTTCAAGACTTATTCGAATCTCAAAACCCACATGGACATCCATGAAGAAACTTCTTACCCTTGCTACGTGTGCAACCGTGTGCTGAACAGCCGGCGGACATTACGCAAGCACCTCTTAGTGCACGAGGATAAATGCAGGCATGTCTGTTCATACTGCAATAAGGCGTTTAAGAGAAGGCAAACTTTGAAGGTACACATGTACACTCACACTGGCGACAAACCTCTGTCGTGCAAATGGTGCGAAGAACGGTTTGCGTATGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCTGACAAGATGGCGCAGCAGGCCAACGAGCCCTACCTGTACCGTCATCACACCATCATACAACATCAGGATTATATAAAAGCTGATGTCGCCGCCGTGAACGCGAAAAACGAAGTGGAGGCTTTATAA
Protein Sequence
MTSLRDLCRLCAKKDEFSKDLLDVNNKNVLNLIRDFIQITVNELEDLPTKICLNCEEKMVSFQLFVLECYKVQEDFRKQVDKVELQIGPESDIKLEISNPYYAVPLIKSEVKDELTAEDIVCAITANDPSLSEFEAVDYNDGGVHDDDDDDDDLDDIAIASLKDFKTKRIKRKVVSEEDSVKFSEILKQPNLKVKDFVKLTCHICEAESKTWSNLRIHYFKTHRSKAVAYCICGYAIRSKSVLYKHVSQHKMESRKIRRAADLLEEKQEDSKYSNLNVKNFVNFTCSTCQKVCSSWYSLKSHCERVHNTLPIVHCICGIALKSKSVLYKHIQDHKNPNVLSCDKCPRITKTLAALNKHKMRHVPKSERKFACDSCDKIFNTKDALKSHERSHIPIEDRKIYHCDMCNMKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDIHEETSYPCYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCEERFAYASTLRSHRLRCHPDKMAQQANEPYLYRHHTIIQHQDYIKADVAAVNAKNEVEAL