Cros018766.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000026.1:10720012-10728670[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.031 2.5 9.7 1.0 2 23 203 225 202 225 0.94 2 12 1.7 1.4e+02 4.2 0.3 5 23 234 252 233 252 0.94 3 12 0.00042 0.034 15.6 2.8 1 23 285 308 285 308 0.94 4 12 0.37 30 6.3 0.5 5 23 317 335 315 335 0.94 5 12 0.0027 0.22 13.0 0.2 3 23 343 363 341 363 0.96 6 12 1.2e-05 0.00095 20.4 0.5 1 23 371 393 371 393 0.97 7 12 0.00045 0.036 15.5 1.7 1 23 402 425 402 425 0.97 8 12 0.0003 0.024 16.0 0.2 1 23 431 453 431 453 0.97 9 12 1.3e-06 0.0001 23.5 3.3 1 23 459 481 459 481 0.98 10 12 0.0003 0.024 16.0 0.6 1 23 486 508 486 508 0.98 11 12 5e-06 0.0004 21.6 3.3 1 23 514 536 514 536 0.97 12 12 0.00024 0.019 16.3 2.7 2 23 543 565 542 565 0.95
Sequence Information
- Coding Sequence
- ATGGCAAGCTTTAAAGATTTATGCAGACTGTGTGCAAAAAAAGATGAATTGAGCAAGGATTTACTCGAGGAAAACAGCAAGAATCTTTTGAATCTAATCAGAGATTTTATGCAGATAACGGTTAACGATGTAGAAGATCTGCCAACAAAAATATGCCTGAATTGTGAAGAGAAAATGGTATCTTTCCAATTGTTTGTGCTGGAGTGCTATAAAGTTCAAGATGACTTTAGAAAACAAATGGACAAAGTTGGACTCCAAATTGAACCTGATTTTGCAATCAAGCTTGAGAATAGCAATGCTTACTATGGTACATTGCCTTTGATTAAATCAGAGGTTAAAGATGAATTAACTGCTGAGGATATTGTATGTGCAATTGCAACAAATGATGCAACACTGGCAGACTATGAAGCTGTGGActacaatgatgatgatgacgaccatgttgatgatgacgatgatgatgacttggATGATGTAGCAATTGCTTCTCTAAAGGATATAAAGAAAAATCGCATCAAAAGAAAAGTAGTTTCAGAGGAGGATTCTGTGAAATTTAGTGAACTATTAAAACAGCCCAATTTGAAAGTGAAAGATTTTGTCAAGTTAACATGTCATATATGTGAAGCAGAGTCTGATACATGGAATAATTTGAGATTGCATTACTTCAAAACACATAGAAGTAAAGCTGTGGCCTATTGCATGTGCGGTTATGCCATAAGATCCAAAAGTGTCTTGTACAAGCATGTGTCTCAGCACAAGCAAGAGAGCAGGAAGATAAGAAGGGCCGCAGATATGTTGGAGGACAGACAAGACCAAAAGTATTGcaaaataaatgttagaaaCTTCGTGAATTTCACTTGCACCACGTGTCAAAAGGCATGTTCCAGCTGGTACAGTTTAAAGTCGCACAGTGAAAGGGCACATAACATTTCGCCCATAGTTCACTGTGTATGTGGAATTGCTCTTAAATCCAAATCTGTACTTTACAAACACATACAGGATCATAAAAATCCAAATGTTCTAGcATGTGACAAATGCCCTCGCGTAGCTAAAACGTTAGCAgcattaaataaacataaaatgagACATGTACCAAAATCGGAAAGAAAGTTTGCATGCGAGTCATGCGATAAGATATTTAACACGAAGGATGCTTTAAAATCTCACGAGAGATCTCACATTCCAATAGAAGACAGGAAAATATATCATTGTGATATTTGTAATATGAAGTTTACTACACGCTCTTCGGCTGCGTCACACAAGCGCGTCGTACATGACAAGATCAAAAGTTACGTATGCGACTTGTGCGGCTACGCGTGCGGCACCAACGGCGAGTTGAGGCAGCACCGCGCCATCCACAGCGACGACAAACCCTTCGTTTGCAAGAAATGCTTCAAACCtttTAAGACTTATTCGAATCTCAAAACACACATGGACACTCACGAAGAAACGTCTTATCCTTGCTATGTTTGTAATCGGGTGCTGAACAGCCGACGGACTTTACGCAAACATCTCCTTGTCCACGAAGACAAGTGTCGCCATGTTTGTTCATACTGCAACAAAGCTTTCAAGAGAAGGCAAACATTGAAGGTGCACATGTACGTTCACACTGGCGACAAACCGTTGTCTTGCAAATGGTGCGATGAGCGGTTTTCGTACGCGTCCACGCTGCGCTCGCACCGGCTCCGCTGCCACCCGGATAAGATGGCGCAGCAGGCCAACGAGTCTTATATGTATCGCCATGTCAACATCATGCAACAACAGGATTATATCAAAGCTGATGTCGCTGCGGTAAACGCGAAAAACGAAGTGGAGGCTTTATAA
- Protein Sequence
- MASFKDLCRLCAKKDELSKDLLEENSKNLLNLIRDFMQITVNDVEDLPTKICLNCEEKMVSFQLFVLECYKVQDDFRKQMDKVGLQIEPDFAIKLENSNAYYGTLPLIKSEVKDELTAEDIVCAIATNDATLADYEAVDYNDDDDDHVDDDDDDDLDDVAIASLKDIKKNRIKRKVVSEEDSVKFSELLKQPNLKVKDFVKLTCHICEAESDTWNNLRLHYFKTHRSKAVAYCMCGYAIRSKSVLYKHVSQHKQESRKIRRAADMLEDRQDQKYCKINVRNFVNFTCTTCQKACSSWYSLKSHSERAHNISPIVHCVCGIALKSKSVLYKHIQDHKNPNVLACDKCPRVAKTLAALNKHKMRHVPKSERKFACESCDKIFNTKDALKSHERSHIPIEDRKIYHCDICNMKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCKKCFKPFKTYSNLKTHMDTHEETSYPCYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYVHTGDKPLSCKWCDERFSYASTLRSHRLRCHPDKMAQQANESYMYRHVNIMQQQDYIKADVAAVNAKNEVEAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00462663;
- 90% Identity
- iTF_00342466; iTF_00155550; iTF_00156506;
- 80% Identity
- -