Acap002003.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392501.1:15951325-15959723[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00083 0.076 14.5 1.9 2 23 169 191 168 191 0.92 2 12 1.8 1.6e+02 4.0 0.3 6 23 201 218 199 218 0.94 3 12 0.016 1.5 10.5 4.4 1 19 252 270 252 275 0.90 4 12 0.32 29 6.4 0.5 5 23 284 302 282 302 0.94 5 12 0.0011 0.097 14.2 0.5 2 23 309 330 308 330 0.96 6 12 4.5e-06 0.00042 21.6 1.0 1 23 338 360 338 360 0.98 7 12 0.00095 0.087 14.3 2.0 1 23 369 392 369 392 0.97 8 12 0.00026 0.024 16.1 0.2 1 23 398 420 398 420 0.97 9 12 5.9e-06 0.00054 21.3 1.8 1 23 426 448 426 448 0.97 10 12 0.00026 0.024 16.1 0.6 1 23 453 475 453 475 0.98 11 12 3.4e-06 0.00031 22.0 4.2 1 23 481 503 481 503 0.97 12 12 0.00035 0.032 15.7 2.0 2 23 510 532 509 532 0.95
Sequence Information
- Coding Sequence
- ATGCAAATAACCATACATGAAACTGATGACCTGCCAACAAAGATCTGTATCGACTGTGAAGAAAAAATGGTGTCATTCCAATTGTTTGTCTTAGAATGTTATAAAGTTCAAGATGATTTTAGAAAACAGATGCACAAGGTGAAATTAGATGTTTGTAATGACATGCAAATCAAGCTGGAGGAATCAAATACAGACTATGGAGTACCTATAATTAAATCTGAGGTTAAAGATGAGCTAACAGCTGAAGATATAGTATGTGCAATAACTACAAATGAAGCTTCATTGTCAGAATTAGAAGCTGTGGACTATGCTGACGGAATTGACATGGATGAAGATGATGCTGATGACGATGATGATGATGATTTGGACAACATAGCTATAGCATCTTTGAAAGACATAAAGAGAAAGCGCATTAAGAAAAAAGTAGTTTCAGAAGAGGACTCCTTAAAGTTTAGTGAAATTTTGAAACAGCCAAACTTGAAAGTGAAAGATTTTGTAAAGTTAAAATGTCATCTATGTGGAACAGAATCGAATACATGGAGTAACTTGCGCTTGCATTATTTCAACAACCATAGGAGCAAAGCGATAGCATACTGTCTTTGTGGATACGCCATAAGATCCAAAAGCGTCCTGTACAAGCATGTGTCGCAGCACAAGTTGGAAAGCAGAAAAATAAGAAGAGCTGCTGATTTGGTTGAGGAGAAACAAGAGGATGCTCAGTATTCCAATCTAAATGTTAAAAACTTTGTGAATTTTACGTGCGCCACCTGCCAGAAGGCTTGCTCCAGTTGGTACAGCCTCAAGTCACACTGTGAAAGAGCTCATGACACACTACCCATAGTACACTGTGTTTGTGGAATTGCTCTTAAGTCTAAATCTGTTCTTTACAAACACATACAGGACCATAAAAACCCGAATGTATTATCATGTGACAAATGCCCGCGAATAACAAAAACATTAGCAGCATTAAACAAACATAAAATGAGACATGTACCCAAGTCAGAAAGGAAATTCACTTGCGACTCCTGTGACAAAATATTTAATACAAAGGATGCGTTGAAGTCTCATGAACGTTCACACATTCCAATAGAAGATAGGAAAATATATCACTGTGATATGTGCAATATGAAGTTCACTACCCGATCGTCAGCTGCGTCCCACAAGCGAGTGGTCCACGAGAAGATAAAGAGCTATGTGTGCGACCTGTGCGGGTACGCGTGCGGGACCAATGGCGAACTGAGACAGCATCGCGCTATCCACAGCGAAGATAAACCCTTTGTTTGCAGGAGGTGTTCCAAACCTTTCAAGACTTATTCGAATCTCAAAACCCACATGGACATCCACGAGGAGACTTCATACCCCTGCTATGTCTGCAATCGCGTCCTCAACAGCCGGCGGACGCTGCGCAAGCATTTACTTGTGCATGAAGACAAGTGCCGCCACGTTTGCTCGTACTGCAACAAGGCTTTCAAGAGACGGCAGACCTTGAAGGTCCACATGTACACTCACACCGGCGACAAGCCGCTATCGTGCAAATGGTGCGACGAGCGTTTCGCGTACGCGTCCACCTTGCGCTCGCACCGCCTACGCTGCCACCCCGACAAGATGGCGCAGCAGATGAACGAGCAGTACGTCTACCGGCACGTCAACATCATACAGCAGGATTACATCAAAGCTGACGTCGCCGCTGTGAATGCGAAAAACGAAGTCGAGGCTTTATAA
- Protein Sequence
- MQITIHETDDLPTKICIDCEEKMVSFQLFVLECYKVQDDFRKQMHKVKLDVCNDMQIKLEESNTDYGVPIIKSEVKDELTAEDIVCAITTNEASLSELEAVDYADGIDMDEDDADDDDDDDLDNIAIASLKDIKRKRIKKKVVSEEDSLKFSEILKQPNLKVKDFVKLKCHLCGTESNTWSNLRLHYFNNHRSKAIAYCLCGYAIRSKSVLYKHVSQHKLESRKIRRAADLVEEKQEDAQYSNLNVKNFVNFTCATCQKACSSWYSLKSHCERAHDTLPIVHCVCGIALKSKSVLYKHIQDHKNPNVLSCDKCPRITKTLAALNKHKMRHVPKSERKFTCDSCDKIFNTKDALKSHERSHIPIEDRKIYHCDMCNMKFTTRSSAASHKRVVHEKIKSYVCDLCGYACGTNGELRQHRAIHSEDKPFVCRRCSKPFKTYSNLKTHMDIHEETSYPCYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCDERFAYASTLRSHRLRCHPDKMAQQMNEQYVYRHVNIIQQDYIKADVAAVNAKNEVEAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00462663;
- 90% Identity
- iTF_00149718;
- 80% Identity
- -