Alat010578.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014440.1:10590289-10603874[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.11 14.1 0.8 2 23 267 289 266 289 0.94 2 12 0.38 38 6.1 0.2 5 23 298 316 297 316 0.95 3 12 0.0015 0.15 13.7 3.3 1 19 350 368 350 373 0.90 4 12 0.26 26 6.6 0.6 5 23 382 400 380 400 0.94 5 12 0.01 1 11.1 0.4 2 23 407 428 406 428 0.96 6 12 4.4e-05 0.0044 18.5 0.5 1 23 436 458 436 458 0.97 7 12 0.00068 0.068 14.8 2.3 1 23 467 490 467 490 0.97 8 12 0.00031 0.031 15.8 0.2 1 23 496 518 496 518 0.97 9 12 1.3e-06 0.00013 23.3 2.8 1 23 524 546 524 546 0.97 10 12 0.00031 0.031 15.8 0.6 1 23 551 573 551 573 0.98 11 12 4.1e-06 0.00041 21.7 4.2 1 23 579 601 579 601 0.97 12 12 0.0014 0.14 13.7 2.0 2 23 608 630 607 630 0.95
Sequence Information
- Coding Sequence
- ATGATGCTACGTGAATCAGGAAATTACAGTGGTTCAAAAGTTGTCAGAGATATACTGACATCACCAAATAGAGGAGATAAATATCAAAAGGCTTTTAGAAAAAGCGACGCACCTATTTCAAAGTCTCAACTAAGCCCCACACAGGCACTTTCAGTGTTTGTGGAAGCATCACTGACCAGAAAACAGTACGAAATAATTCGTACTAGTGACAAGAAACTACTGTGTGCGAAAAAAGATGAGTTTAGTAAGAATTTACTGGCAGAAAACAATACGCATGTATTAACTCTCATCAGAGACTTTATTCAGATAACAATAAATGAAACGGATGCGTTGCCAACAAAAATATGTCTTAGCTGTGAGGAAAAACTGGTGTCTTTTCAATTGTTTGTTTTGGAATGTTATAAAGTTCAAGATGAGTTTAAAAAGATAATAGATAATGTGGAGCTGGACTGCTGCAGTGGCCTGCAAGTCAAACTCGAAGATAGTAATACAGTCTATGGAGTACCTGCCATTAAATCAGAGGTCAAAGATGAGCTTACTGCTGAAGATATTGTGTGTGCAATTGCAAAAAGTGAAGCTTCCATGTCAGAATTTGAAGCAGTGGACTACAATGATGATGACGGTggtgacgatgatgacgacgacgagGACGATGACCTGGATGATATAGCAATAGCAACATTAAAAGACATTAAGCAAAAGCGTACCAAAAGGAGAATAATTTCAGAAGAGGAATCTTTAAAGTTTAGCGAACTATTGAAACAACCTAACTTAAAAGTCAAAGATTTTGTTAAGTTAACCTGTAACATATGTAAAGCAGAGTCAAAGACATGGAGCAATTTGCGAATACATTACTTTAAAACTCACAGAAGTAAAGTGGTTGCTTACTGCATCTGTGGCTATGCGGTTAAATCTAAGAGTGTGCTTTATAAGCATGTATCACAGCATAAGTTGGAAAGCAGAAAAATAAGAAAAGCTGCAGACTTAGTGGAAGAGAAACAAGAGGATGACAAATATTCCAGTTTAAATGTTAAAAACTTTGTTAATTTTACTTGTGAAATTTGTCAAAAAGGCTGCTCCAGTTGGTACAGTTTGAAGGCCCACTGTGAAAGAGCCCACGATACCATGCCCATTGTGCACTGCATATGTGGAATTGCTCTCAAATCCAAATCAGTTCTTTATAAGCACATACAGGATCATAAAAATCCTAATGTATTATCCTGTGATAAATGTCCTCGAATATCAAAAACAATAGCAGGGCTAAACAAACATAAAATGAGGCATATACCAAAATCGGAAAGAAAGTTTGCATGTGACTcttgtgaaaaaatatttaatacaaagGATGCTTTGAAATCTCACGAAAGATCACACATTCCAATAGAGGCGAGGAAAATATACCATTGTGACAAGTGCAATATGAAGTTCACGACGCGGTCGTCGGCGGCGTCGCACACGCGCGTGGTGCACGACAAGATCAAGAGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGGGAGCTGCGCCAGCACCGCGCCATCCACAGCGAGGACAAGCCGTTTGTCTGCAGGAAGTGCTCCAAATCCTTTAAGACTTATTCGAATCTCAAAACGCACATGGACATCCACGAGGACACGTCGTACCCTTGTTACGTGTGCAACCGCGTGCTCAACAGCCGACGGACTCTTCGCAAACATCTTCTTGTACACGAGGACAAGTGTCGGCACGTCTGCTCCTATTGTAATAAGGCGTTCAAGAGAAGGCAAACGTTAAAGGTGCATATGTACACGCACACGGGTGACAAGCCGCTATCGTGCAAGTGGTGCGAGGAGCGGTTCGCGTACGCATCTACCCTGCGGTCGCACCGTCTGCGCTGTCACCCCGACAAGATGGCGCAGCAGGTCACCGACACGTACATCTACCGCCACCACAACATCATGCAGCAGCAGGTGCAGgATTATATTAAATCCGACCTTGTGGCTGTGAACGCAAAAAATGAAGTGGaggctttataa
- Protein Sequence
- MMLRESGNYSGSKVVRDILTSPNRGDKYQKAFRKSDAPISKSQLSPTQALSVFVEASLTRKQYEIIRTSDKKLLCAKKDEFSKNLLAENNTHVLTLIRDFIQITINETDALPTKICLSCEEKLVSFQLFVLECYKVQDEFKKIIDNVELDCCSGLQVKLEDSNTVYGVPAIKSEVKDELTAEDIVCAIAKSEASMSEFEAVDYNDDDGGDDDDDDEDDDLDDIAIATLKDIKQKRTKRRIISEEESLKFSELLKQPNLKVKDFVKLTCNICKAESKTWSNLRIHYFKTHRSKVVAYCICGYAVKSKSVLYKHVSQHKLESRKIRKAADLVEEKQEDDKYSSLNVKNFVNFTCEICQKGCSSWYSLKAHCERAHDTMPIVHCICGIALKSKSVLYKHIQDHKNPNVLSCDKCPRISKTIAGLNKHKMRHIPKSERKFACDSCEKIFNTKDALKSHERSHIPIEARKIYHCDKCNMKFTTRSSAASHTRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSEDKPFVCRKCSKSFKTYSNLKTHMDIHEDTSYPCYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCEERFAYASTLRSHRLRCHPDKMAQQVTDTYIYRHHNIMQQQVQDYIKSDLVAVNAKNEVEAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00462663;
- 90% Identity
- iTF_00009344;
- 80% Identity
- -