Camp014024.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419658.1:10946949-10955821[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0041 0.22 12.5 0.7 2 23 208 230 207 230 0.91 2 12 5.7 3.1e+02 2.6 0.6 6 23 240 257 238 257 0.92 3 12 0.016 0.88 10.6 4.1 1 19 291 309 291 314 0.89 4 12 0.38 20 6.3 0.5 5 23 323 341 321 341 0.94 5 12 0.0013 0.071 14.1 0.5 2 23 348 369 347 369 0.96 6 12 5.5e-06 0.0003 21.5 1.0 1 23 377 399 377 399 0.98 7 12 0.0008 0.043 14.7 1.4 1 23 408 431 408 431 0.97 8 12 0.00032 0.017 16.0 0.2 1 23 437 459 437 459 0.97 9 12 2.4e-06 0.00013 22.7 1.9 1 23 465 487 465 487 0.97 10 12 0.00032 0.017 16.0 0.6 1 23 492 514 492 514 0.98 11 12 4.3e-06 0.00023 21.9 4.2 1 23 520 542 520 542 0.97 12 12 0.00033 0.018 16.0 2.1 2 23 549 571 548 571 0.95
Sequence Information
- Coding Sequence
- ATGACTAGCTTTAAACACTTGAAGTACTTGTGTAGACTTTGTGCGAAAAGCGATGAGTTTTGCAAGGATTTACTCGAAGAAAGCAACAAAAACGTTATGAGCATGATAAGAGATTTTATTCAAATAACTATAAATGAAAGTGATGATTTACCAACCCGAATCTGTCTCAACTGTGAAGAGAAAATGGTGTCCTTTCAATTGTTTGTCTTGGAATGTTATAAAGTCCAGGAGGATTTTAGAAAACAATTGGATAAGGAGCAGTTAGACATTTGTACTGAATTGCAAATCAAGCTTGAAGAAACTACTACAGACTATGGAGCATCTCTGATAAAATCTGAGGTAAAAGATGAGTTAACTGCTGAGGACATAGTGTGTGCAATCACTTCAAATGATGCTTCATTGTCTGAATTTGAAGCAGTGGATTACAATGATGATATTGACATAAATGATGATGTTGATGAGGATGAAGATGATGATGACTTGGATGATGTAGCAATAGCATCACTGAAGGAAATAAAGCAAAAGCGGATCAAAAAGAAAGTAATTTCAGAAGAGGACTCTATAAAGTTTAGTGAACTTTTAAAACAGCCAAACTTGAAAGTGAAAGATTTTGTTAAGTTGATATGTCACCTGTGTGGAGCAGAGTCCAATACTTGGAGCAACTTGCGCCTGCATTACTTCAATAATCATAGAAGCAAAGTTGTAGCATACTGCCTGTGTGGATACGCAATAAGATCCAAAAGTGTTCTCTATAAACATTTTTCTCAGCACAAGTTGGAAAGTAGAAAAATAAGAAGTGCTGAGAATTTGCATGTAGAAAGACCAGAAAAATCTCAGTATTCAGATCTGAAAATTAATAACTTCGTGAAtttcaatTGCAATGCCTGTGATAAGGTGTGCTCCAGCTGGTATAGTTTGAAGTCACATTGTGAAAGAGCTCACAAGATTCTTCCAGTAGTGCATTGTGTTTGTGGCATTGCTCTCAAGTCAAAGTCAGTTCTCTACAAACATATAAATGATCACAAAAATCCTAATGTATTATCGTGTGACAAATGTCCACGAATTACGAAAACCTTGGCAGCGTTAAACAAGCATAAAATGAGACACGTCCCAAAATCGGAGCGGAAATTCACGTGCGAATCCTGTGATAAAATATTTAATACTAAGGATGCGTTAAAATCTCATGAACGGTCACACATTCCAATAGAAGATAGGAAAATTTACCACTGTGGTATTTGTAACATGAAGTTCACAACCCGGTCGTCAGCGGCGTCGCACAAGCGCGTGGTACACGACAAAATCAAGAGTTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACTAACGGCGAGCTGCGACAGCACCGCGCCATACACTCCGACGACAAGCCCTTCGTGTGCAGGAAGTGCTCCAAGCCATTCAAAACTTACTCGAATCTCAAGACTCACATGGACATTCATGAAGAAACTTCGTACCCGTGCTACGTGTGCAACCGCGTGCTAAACAGCCGCCGGACGCTGAGGAAACATCTGCTGGTACATGAGGACAAGTGCCGGCACGTGTGCTCGTATTGCAATAAGGCCTTCAAGAGGAGGCAGACATTGAAGGTCCACATGTATACTCACACGGGCGACAAGCCGCTGACGTGCAAATGGTGCGACGAACGGTTCGCGTACGCGTCCACTTTACGATCGCACCGCTTGCGATGCCACCCCGACAAGATGGCCGCCCAGATGAACGACCAGTACGTCTACCGGCACGTCAACATCCTGCAGCAGGGTTACATCAAAGCTGACGTCGCCGCGATTAACGCGAAAAATGAAGTAGAGGCTATTTAA
- Protein Sequence
- MTSFKHLKYLCRLCAKSDEFCKDLLEESNKNVMSMIRDFIQITINESDDLPTRICLNCEEKMVSFQLFVLECYKVQEDFRKQLDKEQLDICTELQIKLEETTTDYGASLIKSEVKDELTAEDIVCAITSNDASLSEFEAVDYNDDIDINDDVDEDEDDDDLDDVAIASLKEIKQKRIKKKVISEEDSIKFSELLKQPNLKVKDFVKLICHLCGAESNTWSNLRLHYFNNHRSKVVAYCLCGYAIRSKSVLYKHFSQHKLESRKIRSAENLHVERPEKSQYSDLKINNFVNFNCNACDKVCSSWYSLKSHCERAHKILPVVHCVCGIALKSKSVLYKHINDHKNPNVLSCDKCPRITKTLAALNKHKMRHVPKSERKFTCESCDKIFNTKDALKSHERSHIPIEDRKIYHCGICNMKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDIHEETSYPCYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFAYASTLRSHRLRCHPDKMAAQMNDQYVYRHVNILQQGYIKADVAAINAKNEVEAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00462663;
- 90% Identity
- iTF_01134055;
- 80% Identity
- -