Dmen001210.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- -
- Assembly
- GCA_949125395.1
- Location
- OX421310.1:14901637-14921442[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.23 31 6.7 0.2 2 23 473 495 472 495 0.96 2 13 0.00033 0.045 15.6 1.6 2 23 500 521 499 521 0.97 3 13 0.24 33 6.6 1.6 2 23 525 546 524 546 0.95 4 13 1.1 1.5e+02 4.6 0.6 1 23 551 574 551 574 0.92 5 13 0.15 21 7.3 0.1 2 23 632 654 632 654 0.94 6 13 0.0068 0.92 11.5 2.5 2 20 661 679 660 681 0.93 7 13 0.00026 0.035 16.0 1.7 1 21 690 710 690 711 0.93 8 13 0.56 75 5.5 1.4 1 23 719 742 719 742 0.84 9 13 8.9 1.2e+03 1.7 0.3 2 16 748 762 747 770 0.68 10 13 0.00076 0.1 14.5 0.4 2 23 780 801 779 801 0.94 11 13 0.032 4.3 9.4 0.1 2 23 828 848 828 848 0.96 12 13 0.00018 0.024 16.5 3.0 2 23 854 875 853 875 0.87 13 13 1.5 2.1e+02 4.1 0.5 2 23 880 900 879 900 0.90
Sequence Information
- Coding Sequence
- ATGCCTGGTCATCGTTGTGTTCTTGGATGCGAGCAGACTGAGACTGggTCTGTTTTACATATGTTTCCAAATCCTGTCAAATTTCCTGAACGCTTCAAGCTCTGGGTTAGCATTGTCGGAGGAAAGTTGGAAGTGGCATCGGACTATGAGTATTACAAAAAGAAGAGAATTTGTGATATCCATTTCAAAGATGAACATAAAAATCGTTACAATCGTTTAGGTGCATTAGCTGTTCCGTGCCGTTACTTGGCTgACCCCGTATCCTTGCCCAAATTTACTTACATTGAAAGAAGACTACCAAGAGAAAAGCAGTACACACCAAAATGTTCTCCATTAACTTCTGAAGATCCATTTTGTGTGTTCTCAGAGCTACCAAAGATTCCAACAAAACCTACTGTAACAATAAATGTAGCAGAGACTATAGAGGCcaGTACATTGGGGAAAACGTCAGACGAAAGTACATCAGCTCCATCACCCACAGAAGTTGGAGACTGTGATATTGATGACCCACCAGAAGTTCATAGTCCAGCTCCAGAAGACATTAGCAATTCACACTTAGaCACACCAGCAGTTATTGAATTGCCAAGAGAGTGTACTACAGAGTCTGATGTAGCCGAGACGGTCAGCAAAGAGCCCGAGATTAAAACATATGGCCCAAAAGCTGACAAAACTCGACCTGTGAAGCAAGTACTTCAGTTGCGTTTACTAGACGACGAAGGTGTTTGTGATGAACCAATATATGAAGTTCTGACAGAAGATGAAACCGACAAGGAAGTGGACAAGAAACAAACAGCGACACAGACTGACGtacAAAATACGTCTTCAAGTGTAAATGATCCACCGAGCAAGGAGAGCGATGTTCAATCTGCGCCAATAGCTACACCAGCGGAGAGAACAGCCCCGACATATGACAAGTACACCAACAAGGAATACTGGAAGTTCAAGCTGAAGCACATCCTCCACAACACGAAGTTCTGTGGAGTCTGTTTAGAGGCTGATGTCGACATGAACGCACTCTCCCATGTGTTTGAGATCACTGATGATGAAAGGACTTGGAGCACATCTCTCGCAGACATTGTACATAAGGTCTTCAGAGAGGGTTGGTATTGGCCGGCTAACTCACAAATATGCAACAATTGTACCAAGAAACTAATTCagtcttatatatttatacgcAATGCTGAAGAGACATCGAGAATGCTGGAGCGTCACTTAGATGAGTTGTACACGAAAACTTGCTACGTGCGTAATAAATCTCTGAAATATGCCAACAGCACACAACCAAGGATATACAATGTTGTTATTGCATTAGACAATAAAGTGATTTCACAGAACTTTGAAAGTAacgaaattaaaatagaaacaccGGAACCAGTGCAATGTGAAAGAGGTCAGATTTGCGACAAAAGGAAACTGAGGTGTGTGAGTTGTAATGTGGTTGTACGGTCGTACAGAGCTTGGACGAGGCACGAGAGAACAGCTCACAAACAGACTGTCAGATGTAGAATATGTCTTCAGAGCTACAAGACACAGCGGGCCTTGACTACACATTACAGGACGCATTTGAGGTCGCGCTGTCCGTTTTGTCACAGAACTGTGCGAGATGGTGCACTGTTGCAACATTTGAAGACGCGCCACAAACACTCGATACACTCGTGTACGACGTGTAATGTCGCTCTCTACTCCGCCGAGGCTCTAGGGACTCATATAGAGGAGTGTCATCGCAGAGAGGGTTCTAAATGTGTGACGTGTCTGCAGAGTTTGTCGCGAGTCGAGTTGGAGCGGCACCAGTGCAGGTTCAAGTGTCCGGAGTGTGAGGAGTTGCCTTGTGTCCATCACCGGCACCTGATGTGGTACAGAGAGCAGATGGACCTGGACCCTGGACCCAGGGCCAAGTGTGCGGACTGTCGCTACGTGGCGTCCAGCAAGCAGGCGCTGTTAGCTCACGTCAACGCAACACATCTCAGTCAACAGTCTCTCCGCTGTGCCAGATGTGGACAACACTTTTCTCGGCGAGCTCATTTAGATAAACATGTTTGTGCTTCTGGGAGAGGCAACAAACACCTCCACGAGTGTCGATATTGTGACAAGACATTTAGTAATTTGTACATGTGGAAACGACACGAGAAACTCTGTAAAGGTGTTCAAAGGAAGTATCAATGCGAAGATTGTCCAGCTAATTTTGATTCTACAAAAGATCACATGAAacatggaaaactcaagcacgGCAAAGAGTTCCTCTCGTGCAGGTTGTGTGACAGAGTGTTTCTAAACGACCTGAAGAGGACGAGACACGAACGGCAAGCCCACGGCGAACAGCGAGGAAGGGCAAGCTCAGTCTGTGCGGCGTGTCACACTGAGTTCTCCTCGAAGGCGGCCTTGGAACTGCACATGAGATACCATGGAGCTGAAGCAATGAGTCAGCTCGATAGTTTGGGACAGTTGAAGTGTCACAAATACAGACGCAGACGTTCGTTTGCGGTGTGCGAAGTTTGTGGCGCAGTGTTGAGGCGGATTCTGTTAAAGAAACACATGAAAGGCCATGCTATGGCGACAGTCTCGTGTAAAACGTGCGGCAAATTCTTCCAGAGCTCGACTTTACTGAGACATCATCAGAGTGTTCACGCGAGGACTCTGCCGTGTCCGAGATGTAAGAAATTGATCAGTTCTGCAAAGTTATGGCGACACTTCAGGAATCACCTCATTCGAGACTCTCTAAATGTCAAACTTGCTGCAATACATGCTCTATGA
- Protein Sequence
- MPGHRCVLGCEQTETGSVLHMFPNPVKFPERFKLWVSIVGGKLEVASDYEYYKKKRICDIHFKDEHKNRYNRLGALAVPCRYLADPVSLPKFTYIERRLPREKQYTPKCSPLTSEDPFCVFSELPKIPTKPTVTINVAETIEASTLGKTSDESTSAPSPTEVGDCDIDDPPEVHSPAPEDISNSHLDTPAVIELPRECTTESDVAETVSKEPEIKTYGPKADKTRPVKQVLQLRLLDDEGVCDEPIYEVLTEDETDKEVDKKQTATQTDVQNTSSSVNDPPSKESDVQSAPIATPAERTAPTYDKYTNKEYWKFKLKHILHNTKFCGVCLEADVDMNALSHVFEITDDERTWSTSLADIVHKVFREGWYWPANSQICNNCTKKLIQSYIFIRNAEETSRMLERHLDELYTKTCYVRNKSLKYANSTQPRIYNVVIALDNKVISQNFESNEIKIETPEPVQCERGQICDKRKLRCVSCNVVVRSYRAWTRHERTAHKQTVRCRICLQSYKTQRALTTHYRTHLRSRCPFCHRTVRDGALLQHLKTRHKHSIHSCTTCNVALYSAEALGTHIEECHRREGSKCVTCLQSLSRVELERHQCRFKCPECEELPCVHHRHLMWYREQMDLDPGPRAKCADCRYVASSKQALLAHVNATHLSQQSLRCARCGQHFSRRAHLDKHVCASGRGNKHLHECRYCDKTFSNLYMWKRHEKLCKGVQRKYQCEDCPANFDSTKDHMKHGKLKHGKEFLSCRLCDRVFLNDLKRTRHERQAHGEQRGRASSVCAACHTEFSSKAALELHMRYHGAEAMSQLDSLGQLKCHKYRRRRSFAVCEVCGAVLRRILLKKHMKGHAMATVSCKTCGKFFQSSTLLRHHQSVHARTLPCPRCKKLISSAKLWRHFRNHLIRDSLNVKLAAIHAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442050; iTF_01361167; iTF_01361214; iTF_01360716; iTF_01361186; iTF_01361166; iTF_01360679;
- 90% Identity
- -
- 80% Identity
- -