Slub029807.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992300.1:11771191-11782357[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 19 6.9 0.2 2 23 455 477 454 477 0.96 2 13 0.00032 0.031 15.7 1.6 2 23 482 503 481 503 0.97 3 13 0.23 23 6.7 1.6 2 23 507 528 506 528 0.95 4 13 1 1e+02 4.6 0.6 1 23 533 556 533 556 0.92 5 13 0.15 14 7.3 0.1 2 23 614 636 614 636 0.94 6 13 0.37 37 6.0 3.6 2 20 643 661 642 663 0.93 7 13 0.001 0.1 14.1 2.5 1 21 672 692 672 693 0.93 8 13 0.27 27 6.4 2.3 1 23 701 724 701 724 0.94 9 13 8.2 8.1e+02 1.8 0.4 2 21 730 749 729 752 0.69 10 13 9e-05 0.0088 17.4 0.6 2 23 762 783 761 783 0.96 11 13 0.24 24 6.6 0.1 2 23 810 830 810 830 0.94 12 13 4.1e-05 0.004 18.5 3.3 2 23 836 857 835 857 0.96 13 13 2.7 2.7e+02 3.3 1.1 2 23 862 882 861 882 0.89
Sequence Information
- Coding Sequence
- ATGAGTACCAGAAAAGAAATCCTGAGAACGTGTTGCAAGTGTGGGTCTTCTATTGCCAAAGATCCCAGCATCACATTGAATCGCTTTCCCAACCCTGGCCCCACAAATAGTCTACGATGTGAAGCATGGGCAAAGTATTGTTATCCCGATGAAGGCTGGTATTGTGTAAGCTTCCAAAAGGATTTATATACCAGACACAAAATGTTATGCAGTAAACATTTCAGACcaacttgttttattaataaaaagttgttTAGAACAGCAGTACCTGATGTAGTGGAAAATGATAagAATTCTGCACCGTGTGTCTCAGAAACAAATTACACGCATGTTTCTATTGCCGGAGAATCTgaaataaGTATATTGGGGAAGACATCACATGAGAGTATATCAGTTCTATCACCTACAGAACTTGGAGACTGTGATATTGATGACCCACCAGAAGTAAATAGTCCAGAAGACATTCGCCATTCGCACTTAGACAAACCAGCAGTTATTGAATTGCCAAGAGAGTTTGCTAAAGAGTCTGATGTAGCCGAGACTGTTAGCAAAGCTGATGAGCCTAAAATAACAAAGTCCGTCACAATTAAAACATATGGCTCAAAAGCTGACAAACCTCGACCTGTGAAGGAAGTACTTCAGTTGCGTTTATTAGACGACATCAATGTTTGTGATGAACCAATATATGAAGTTCTGACAGATGAGGAACCCGACAAGGACGTGGACAAGAAACAAACAGCGACACAGACTGACGTACAAAATACGTCTTCAAGTGTAAATGATCCGCTGAGCGAGGAGACCGAAGTTCAATCTGCGCCAATAGATGCACCAGCCGAGACAACAACCCCGACATGTGACAAGTACACCAACAAGGAATACTGGAAGTTGAAGCTGAAGCACATATTCCACAACACGCAGTTCTGTGGAGTCTGTTTGGAGGCAGACGTCGACTTGAACGCGCTCTCCCATGTGTTTGAGATCACTGATAATGAAAGAACTTGGAGCACATCTCTCGCAGACATTGTACATAAGGTCTTCAGAGAGGGTGGGTATTGTCTGGCTAACTCACAAATATGCAACAATTGTACCAAGAAACTAATTcagtcttatatatttatacgcaATGCTGAAGAGACATCGAGAATGTTGGAGCGTCACTTAGATGAGTTGTACAATAAAACTTGTTATGTACGTAACAGTTATCTAAAAGATGCTAACAGCGCACATACAAAGATATACAATGTTGTTATTGCATTAGACAATAAAGTGATTTCACAGAACTTTGAAAGTAacgaaattaaaatagaaacacCTGAATCAGTGCAAAGTGAAAGAGGTCAGATTGGTGACAAAAGGAAACTGAGGTGTGTGAGTTGTAATGTGGTTGTACGGTCGTACAGAGCTTGGAGGAGGCACGAGAGAACAGCTCACAAACAGAGTGTCAGATGTAGAATATGTCTCCAGAGCTACAAGACACAGCGGGCCTTGACTACACATTACAGGACGCATTTGAGGTCGCGCTGTCCGTTTTGTCACAGAACTGTGCGAGATGGTGCACTGTTGCAACATTTGAAGACGCGCCACAAACACTCGATACACTCGTGTACGACGTGTAATGTCGCTCTCTACTCCGCCGAGGCTCTAGGGACTCATATAGAGGAGTGTCATCGTAGAGAGGGTTCTAAATGTGTGACGTGTCTGCAGAGTTTGTCGCGAGTCGAGTTGGAGCGGCACCAGTGCAGGTTCAAGTGTCCGGAGTGTGAGGAGTTGCCTTGTGTCCATCACCGGCACCTGATGTGGTACAGAGAGCAGATGGACCTGGACCCTGGACCCAGGGCCAAGTGTGCGGACTGTCGCTACGTGGCGTCCAGCAAGCAGGCGCTGTTAGCCCACGTCAACGCAACACATCTCAGTCAACAGTCTCTCCGCTGTGGCAGATGTAGACAACACTTCTATCGGCGAGCTCATTTAGATAAACATGTTTGTGCTTCTGGGAGAGGCAACAATCACTTCCACGAGTGTCGATATTGTGACAAGGCATTTAGCAATTTGTACATGTGGAAACGACACGAGAAACACTGTAAGGGTATTCAAAGGAGGTATCAATGCGACGATTGTCCAGCTAATTTTGATTCAACAAAAGATCACATGAAACATAGAAAACTCAAGCACGGTAAAGAGTTCCTCTCGTGCAGGTTGTGTGACAGAGTATTTCTAAACGACCTGAAGAGGAGGAGACATGAACGGCAAGCCCACGGCGAACAGCGAGGAAGGACGAGCTTAGTCTGTGCGACGTGTCACACTGAGTTCTCCTCGAAGGCGGCTTTAGAACTGCACATGAGATACCATGGAGCTGAAGCAAGGGGTCAGCTCGACAGTTTGGAACAGTTCAAGAGTTACAAACACAGACGCAGACGTTCTTTTGCGGTGTGCGAAGTTTGTGGCGCAGTGATGAGGCGGATTCTGTTGAAGAAACACATGAAAGGCCATTCTATGGCGACAGTGTCGTGTAAAACGTGCGGCAAATCCTTCCAGAGCTCGAGTTCACTGAGACATCATAAGAGTGTTCACGTGAGGACTACGCAGTGTCCTAGATGTAAGAGATTGATAAGTTCTGCAAAGTTATGGCGACACTTCAGGAATCACCTCATTCGAGACTCTCTTGATGTCAAAGTTGGTGCAATAAATGGTCTATGA
- Protein Sequence
- MSTRKEILRTCCKCGSSIAKDPSITLNRFPNPGPTNSLRCEAWAKYCYPDEGWYCVSFQKDLYTRHKMLCSKHFRPTCFINKKLFRTAVPDVVENDKNSAPCVSETNYTHVSIAGESEISILGKTSHESISVLSPTELGDCDIDDPPEVNSPEDIRHSHLDKPAVIELPREFAKESDVAETVSKADEPKITKSVTIKTYGSKADKPRPVKEVLQLRLLDDINVCDEPIYEVLTDEEPDKDVDKKQTATQTDVQNTSSSVNDPLSEETEVQSAPIDAPAETTTPTCDKYTNKEYWKLKLKHIFHNTQFCGVCLEADVDLNALSHVFEITDNERTWSTSLADIVHKVFREGGYCLANSQICNNCTKKLIQSYIFIRNAEETSRMLERHLDELYNKTCYVRNSYLKDANSAHTKIYNVVIALDNKVISQNFESNEIKIETPESVQSERGQIGDKRKLRCVSCNVVVRSYRAWRRHERTAHKQSVRCRICLQSYKTQRALTTHYRTHLRSRCPFCHRTVRDGALLQHLKTRHKHSIHSCTTCNVALYSAEALGTHIEECHRREGSKCVTCLQSLSRVELERHQCRFKCPECEELPCVHHRHLMWYREQMDLDPGPRAKCADCRYVASSKQALLAHVNATHLSQQSLRCGRCRQHFYRRAHLDKHVCASGRGNNHFHECRYCDKAFSNLYMWKRHEKHCKGIQRRYQCDDCPANFDSTKDHMKHRKLKHGKEFLSCRLCDRVFLNDLKRRRHERQAHGEQRGRTSLVCATCHTEFSSKAALELHMRYHGAEARGQLDSLEQFKSYKHRRRRSFAVCEVCGAVMRRILLKKHMKGHSMATVSCKTCGKSFQSSSSLRHHKSVHVRTTQCPRCKRLISSAKLWRHFRNHLIRDSLDVKVGAINGL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442040;
- 90% Identity
- -
- 80% Identity
- -