Slub029814.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992300.1:11856663-11863665[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.17 17 7.1 0.2 2 23 372 394 371 394 0.96 2 12 0.00028 0.028 15.8 1.6 2 23 399 420 398 420 0.97 3 12 0.21 20 6.8 1.6 2 23 424 445 423 445 0.95 4 12 0.92 90 4.8 0.6 1 23 450 473 450 473 0.92 5 12 0.1 9.9 7.8 0.0 2 23 531 553 530 553 0.94 6 12 0.00042 0.041 15.3 1.9 1 21 581 601 581 602 0.94 7 12 0.24 24 6.6 2.3 1 23 610 633 610 633 0.94 8 12 3.1 3.1e+02 3.1 0.3 2 16 639 653 638 661 0.69 9 12 0.0012 0.12 13.9 0.1 2 21 671 690 670 690 0.95 10 12 0.08 7.9 8.1 0.2 2 23 719 739 719 739 0.94 11 12 3.3e-05 0.0033 18.8 2.7 2 23 745 766 744 766 0.87 12 12 6.7 6.6e+02 2.1 0.9 3 23 772 791 771 791 0.86
Sequence Information
- Coding Sequence
- ATGTTCAGTACGCCGATGGAAATAAACAACCAAATTGTAGAGACTTCAGATAACGTGAAGTTTATTCCGCAGTGTACTAAAACACCAGCTGATGAGCATGCGCGACCTTCAAAGATTGACGAAAAAAGGCATTTTAAGAGCACTTCCTCTATGGATTACCCTGAGACTCCAACTAAGCTACATGGGGCAGCTGTTCCATTTGAAGATGGTGATAAGGGATCACAGGAGAAAACAGGCACACCTGCAATTGAATTGCCCAGAGAGGGTGCTAAAGAGTCTGATGCAGCCGAGGCTGTCAGCGAAGCTGATGAGCTTGAAGTGACAGAGTCCGTGCCTAATGAAACACATAGCACACCAGCAGACAAACCTCGACCTCTGAAGCAAGtacTTCAGTTGCGTCTAATAGAAAACGTTAGTGCTTGTGATGAACCACTATATGAAGTTCTGACAGATGATGAAACCAACAAGGAAGTAGACAAGAAACAAACAGCGACACAGACTGACGtacaaAATACGTCTTCAAGTGTAAATGATCCGCCGAGCAAGGAGAGCTATGTTCAATCTGCGCCAATAACTACACCAGCCGAGTCAACAACCCCGACATGTGACAAGTACACCAACAAGGAATACTGGAAGTTGAAGCTGAAGCACATCCTCCACAACACGCAGTTCTGTGGAGTCTGTTTGGAGGCTGACGTCGACATGAAGGCGCTCTCTCATGTGTTTGAGATCACTGAGGATAAAAGAACTTGGAGCACATCTCTCGCAGACATTGTACATAAAGTTTTCAGAGAGGGTGGGTATTGGCCGGCTAACTCACAAATATGCAACAATTGTACCAAGAGACTTATTcagtcttatatatttatatgcaatGCTGAAGAGACATCGAAAATGCTAGAGCGTCACTTAGATGAGTTGTACACTAAAACTTGCTATGTGCGTAACAAATCTCTGAAAGAAGCCAACAGCGCGCAACCAAGGATTCGCAATGTTGTTATCGCATTAGACAATAAAGTGATTTCACAGAACTTTGAAAGTAacgaaattaaaatagaaatacctGAAGCAGTGCAGAGTGAAAGAGGTCAGATTGGTGACAAAAGGAAACTGAGGTGTGTGAGTTGTAATGTGGTTGTACGGTCGTACAGAGCTTGGAGGAGGCACGAGAGAACAGCTCACAAACAGAGTGTCAGATGTAGAATATGTCTCCAGAGCTACAAGACACAGCGGGCCTTGACTACACATTACAGGACGCATTTGAGGTCGCGCTGTCCGTTTTGTCACAGAACTGTGCGAGATGGTGCACTGTTGCAACATTTGAAGACGCGCCACAAACACTCGATACACTCGTGTACGACGTGTAATGTCGCTCTCTACTCCGCCGAGGCTCTAGGGACTCATATAGAGGAGTGTCATCGTAGAGAGGGTTCTAAATGTGTGACGTGTCTGCAGAGTTTGTCGCGAGTCGAGTTGGAGCGGCACCAGTGCAGGTTCAAGTGTCCGGAGTGTGAGGAGTTGCCTTGTGTCCATCACCGGCACCTGATGTGGTACAGAGAGCAGATGGACCTGGACCCTGGACCCAGGGTCAAGTGTGCGGACTGTCGCTACGTGGCATCCAGCAAGCAGGCGCTGTTAGCCCACGTCAACGCAACACATCTCAGTGTGTCCATGGCCGATAGTCGACAGCGCCTCTGTCGGCCAGCTCTAACTGCAATTAACAAGGACAACAAACACCTCTACGAGTGTCGATATTGTAACAAGGCATTCAGCAATTTGTACATGTGGAAACGTCACGAGAAACACTGTGAGGGTATTCAAAGGCAGTATCAATGTGACGATTGTCCAGCTAACTTTGATTCGACAAAAGATCACATGAAACATAGAAAACTCAAGCACGGTAAAAAGTTTCTCTCGTGCAGTTTATGTGACAGAGTGTTTCTAAACGACCTGAAGAGGACGAGACACGAACGGCAAGCCCACGGCGAGCACCGAGGAAGGACGAGCTTAGTCTGTGCGACGTGTCACACTGAGTTCTCCTCGAAGGCGGCCTTGGAACTGCACATGAGATGCAATGGAACTGAAGCAAGGGGTCAGCTCGACAGTTTGGAACAGTTAAAGAGTCACAAACACAGACGCAGACGTTCTTTTGCGGTGTGCGAAGTTTGTGGCGCAGTGATGAGGCGGACTCTGTTGAAGAAACACATGAAAGGCCATTCTATGGCGACAGTGTCGTGTAAAACGTGCGGCAAATCCTTCCAGAGTTCGACTTTACTGAGACACCATCAGAGTGTCCACGCGAGGACTGCGCCGTGTCCTAGATGTAAGAAATTGATGAGTTCTGCAAAGTTATGGCGACACTTTAGGAATCACCTCGTTCGAGATTCCCTTGATGTCAAAGATGCTGCAATACATGTTCTatga
- Protein Sequence
- MFSTPMEINNQIVETSDNVKFIPQCTKTPADEHARPSKIDEKRHFKSTSSMDYPETPTKLHGAAVPFEDGDKGSQEKTGTPAIELPREGAKESDAAEAVSEADELEVTESVPNETHSTPADKPRPLKQVLQLRLIENVSACDEPLYEVLTDDETNKEVDKKQTATQTDVQNTSSSVNDPPSKESYVQSAPITTPAESTTPTCDKYTNKEYWKLKLKHILHNTQFCGVCLEADVDMKALSHVFEITEDKRTWSTSLADIVHKVFREGGYWPANSQICNNCTKRLIQSYIFICNAEETSKMLERHLDELYTKTCYVRNKSLKEANSAQPRIRNVVIALDNKVISQNFESNEIKIEIPEAVQSERGQIGDKRKLRCVSCNVVVRSYRAWRRHERTAHKQSVRCRICLQSYKTQRALTTHYRTHLRSRCPFCHRTVRDGALLQHLKTRHKHSIHSCTTCNVALYSAEALGTHIEECHRREGSKCVTCLQSLSRVELERHQCRFKCPECEELPCVHHRHLMWYREQMDLDPGPRVKCADCRYVASSKQALLAHVNATHLSVSMADSRQRLCRPALTAINKDNKHLYECRYCNKAFSNLYMWKRHEKHCEGIQRQYQCDDCPANFDSTKDHMKHRKLKHGKKFLSCSLCDRVFLNDLKRTRHERQAHGEHRGRTSLVCATCHTEFSSKAALELHMRCNGTEARGQLDSLEQLKSHKHRRRRSFAVCEVCGAVMRRTLLKKHMKGHSMATVSCKTCGKSFQSSTLLRHHQSVHARTAPCPRCKKLMSSAKLWRHFRNHLVRDSLDVKDAAIHVL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442040;
- 90% Identity
- -
- 80% Identity
- -