Dmen001205.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- -
- Assembly
- GCA_949125395.1
- Location
- OX421310.1:14819213-14833160[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.048 6.4 8.9 0.2 2 23 464 486 463 486 0.96 2 12 0.00033 0.044 15.7 1.6 2 23 491 512 490 512 0.97 3 12 0.24 32 6.6 1.6 2 23 516 537 515 537 0.95 4 12 1.1 1.4e+02 4.6 0.6 1 23 542 565 542 565 0.92 5 12 0.15 20 7.3 0.1 2 23 623 645 623 645 0.94 6 12 0.0067 0.91 11.5 2.5 2 20 652 670 651 672 0.93 7 12 0.00047 0.063 15.2 2.3 1 21 681 701 681 702 0.93 8 12 0.28 38 6.4 2.3 1 23 710 733 710 733 0.94 9 12 2.7 3.7e+02 3.3 0.5 1 16 738 753 738 761 0.70 10 12 0.00098 0.13 14.2 0.3 2 23 771 792 770 792 0.95 11 12 0.12 17 7.5 0.2 2 23 819 839 819 839 0.94 12 12 3.9e-05 0.0052 18.6 2.7 2 23 845 866 844 866 0.87
Sequence Information
- Coding Sequence
- ATGAGCTCCAGAAAAGAAATCACGAGAACGTGTTGCATGTGTGGGTCTTCAGTTGCCAAAGATCCCAGCATCACATTGAATCGCTTTCCTAACCCTGGCCCGACAAATAGTCTACGATGTGAAGCATGGGCAAAGTATTGTTTTCCCGATGAAGGCTGGTATTGTGCAAGCTTCCAAAAGGATTTATATACCAGACACAAAATGCTGTGCAGTAAACATTTTAGACCTACTTGTTTCATTAATAAAAAGTTGTTTAGAACAGCAGTACCTGATGTTGTAGAAAATAATAagaattctacaCTGAGTACCTCCGAAACAAATCACACACATGTTCCAATTGCCGGAGAATCTGAaataaGTATATTAGGGAAAACATCACAAGAGAGTATATCAGTTCCACCACCCACAGAACTTGGAGACTGTGATATTGATTACGCATCAGAAGTTTATAGTCCAGAAGACATTCGCCATTCACACTTAGTTGAAGATtttaacctacatgcaaaagACACACCAGCAGTTATTAAATTGCCAAGAGAGTGTGCTAAAGAGTCTGATGTAGCCAAGACGGTCAGCGAAGCTGATGAGCATAAAGTAACAAAGCCCGTCACTATTAAAACATATGGCGCACCAGTTGTCAAACCTCCACCTGTGAAGCAAGAACTTCAGTTGCGTTTAATAGACTACATCAATGTTTGTGATGAACCGATATATGAAGTTCTGACAAATGAAGAAACTGACAAGGTAGTGGAGAAGAAACAAACGGCGACACAGACTGACGtgCAAAATACGTCTTCAAGTTTAAATGATTCGCCGAGCAAGGAGAGCTATGTTCAATCTGCACTACCAGCAACATCAGCCGAGAGTACAGCCCCGACATGTGACAAGTACACCAACAAGGAATACTGGAAGTTGATGCTGAAGCACATCCTCCACAACACGCAGTTCTGTGGAGTCTGTTTGGAGGCTGACGTCGACATGAACGCGCTCTCCCATGTGTTTGAGATCACCGATGATGAAAGGACTTGGAGCACGTCTCTCGCAGACATTGTACATAAGGTCTTCAGAGAGGGTGGGTATTGTCCGGCTAACTCACAAATATGCAACAATTGTACCAATAAACTGATTGagtcttatatatttatacgcAATGCTGAAGAGACATCGAGAATGCTGGAGCGTCACTTAGATGAGTTTTACAGTAAAACTTGCTACGTGCGTAACAAATATCTAAAAGATGCCAACAGCGCACAACCAAGCATATACAATGTTGTTATTGCATTAGACAATAAAGTGATTTCACAGAACTTTGAAAGTAacgaaattaaaatagaaacaccGGAACCAGTGCAATGTGAAAGAAATCAGATTCGCGACAAAAGAAAACTGAGGTGTGTGAGTTGTAATGTGGTTGTACGATCGTACAGTGCTTGGAGGAGGCACGAGAGAACAGCTCACAAACAGAGTGTCAGATGTAGAATATGTCTCCAGAGCTACAAGACACAGCGGGCCTTGACTACACATTACAGGACGCATTTGAGGTCGCGCTGTCCGTTTTGTCACAGAACTGTGCGAGATGGTGCACTGTTGCAACATTTGAAGACGCGCCACAAACACTCGATACACTCGTGTACGACGTGTAATGTCGCTCTCTACTCCGCCGAGGCTCTAGGGACTCATATAGAAGAGTGTCATCGTAGAGAGGGTTCTAAATGTGTGACGTGTCTGCAGAGTTTGTCGCGAGTCGAGTTGGAGCGGCACCAGTGCAGGTTCAAGTGTCTGGAGTGTGAGGAGTTGCCTTGTGTCCATCACCGGCACCTGATGTTGTACAGAGAGCAGATGGACCTAGACCCTGGACCCAGGGCCAAGTGTGCGGACTGTCGCTACGTGGCGTCCAGCAAGCAGGCGCTGTTAGCCCACGTCAACGCAACACATCTCAGTCAACAGTCTCTCCGCTGTGCCAGATGTGGACAACACTTCTCTCGGCGAGCTCATTTAGATAAACATGTTTGTGCTTCTGGGAGAGGCAACAAACACCTCCACGAGTGTCAATATTGTGACAAGGCATTTAGCAATTTGTACATGTGGAAACGACACGAGAAACACTGTAAGGGTATTCAAAGGAAGTATCAATGCGACGATTGTCCAGCTAATTTTGATTCGACAAAAGATCACATGAAACATAGAAAACTCAAGCACGGCAAAGAGTTCTTCTCGTGCAGGTTGTGTGACAGAGTGTTTCTAAACGACCTGAAGAGGACGAGACACGAACGGCAAGCCCACGGCGAACAGCGAGGAAGGGCGAGCTTAGTCTGTGCGGCGTGTCACACTGAGTTCTCCTCGAGGGCGGCCTTGGAACTGCACATGAGATACCATGGAGCTGAAGCAATGGGTCAGCTCGACAGTTTGGGACAGTTGAAGAGTCACAAACACAGACGCAGATGTTCGTTTGCGGTGTGCGAAGTTTGTGGCGCAGTGATGAGGCGGACTCTGTTGAACAAACACATGAAAGGCCATTCTATGGCGACAGTGTCGTGTAAAACGTGCGGCAAATCCTTCCAGAGCTCGACTTTACTGAGACATCATCAGAGTGTTCACGCGAGGACTGCGCCGTGTCCTAGATGTAAGATATTGATCAGTTCTGCAAAGTTATGGCGACACTTCAGGAATCACCTCATTCGAGACTCTCTTGATGTCAAAGTTGCTGCAATAAATGGTCTGTGA
- Protein Sequence
- MSSRKEITRTCCMCGSSVAKDPSITLNRFPNPGPTNSLRCEAWAKYCFPDEGWYCASFQKDLYTRHKMLCSKHFRPTCFINKKLFRTAVPDVVENNKNSTLSTSETNHTHVPIAGESEISILGKTSQESISVPPPTELGDCDIDYASEVYSPEDIRHSHLVEDFNLHAKDTPAVIKLPRECAKESDVAKTVSEADEHKVTKPVTIKTYGAPVVKPPPVKQELQLRLIDYINVCDEPIYEVLTNEETDKVVEKKQTATQTDVQNTSSSLNDSPSKESYVQSALPATSAESTAPTCDKYTNKEYWKLMLKHILHNTQFCGVCLEADVDMNALSHVFEITDDERTWSTSLADIVHKVFREGGYCPANSQICNNCTNKLIESYIFIRNAEETSRMLERHLDEFYSKTCYVRNKYLKDANSAQPSIYNVVIALDNKVISQNFESNEIKIETPEPVQCERNQIRDKRKLRCVSCNVVVRSYSAWRRHERTAHKQSVRCRICLQSYKTQRALTTHYRTHLRSRCPFCHRTVRDGALLQHLKTRHKHSIHSCTTCNVALYSAEALGTHIEECHRREGSKCVTCLQSLSRVELERHQCRFKCLECEELPCVHHRHLMLYREQMDLDPGPRAKCADCRYVASSKQALLAHVNATHLSQQSLRCARCGQHFSRRAHLDKHVCASGRGNKHLHECQYCDKAFSNLYMWKRHEKHCKGIQRKYQCDDCPANFDSTKDHMKHRKLKHGKEFFSCRLCDRVFLNDLKRTRHERQAHGEQRGRASLVCAACHTEFSSRAALELHMRYHGAEAMGQLDSLGQLKSHKHRRRCSFAVCEVCGAVMRRTLLNKHMKGHSMATVSCKTCGKSFQSSTLLRHHQSVHARTAPCPRCKILISSAKLWRHFRNHLIRDSLDVKVAAINGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442040;
- 90% Identity
- -
- 80% Identity
- -