Basic Information

Insect: Spilosoma lubricipeda
Gene Symbol: -
Assembly: GCA_905220595.1
Location: HG992300.1:11814896-11826169[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.24 23 6.7 0.2 2 23 624 646 623 646 0.96

2 12 0.00039 0.038 15.4 1.6 2 23 651 672 650 672 0.97

3 12 0.28 28 6.4 1.6 2 23 676 697 675 697 0.95

4 12 1.3 1.2e+02 4.4 0.6 1 23 702 725 702 725 0.92

5 12 0.14 14 7.4 0.0 2 23 783 805 782 805 0.94

6 12 0.023 2.3 9.8 2.7 2 20 812 830 811 832 0.93

7 12 0.0013 0.12 13.8 2.4 1 21 841 861 841 862 0.93

8 12 0.48 47 5.7 2.1 1 23 870 893 870 893 0.92

9 12 0.00033 0.032 15.6 0.6 2 23 931 952 930 952 0.96

10 12 0.11 11 7.7 0.2 2 23 979 999 979 999 0.94

11 12 5e-05 0.0049 18.2 2.0 2 23 1005 1026 1004 1026 0.92

12 12 0.31 31 6.3 0.6 3 23 1032 1051 1031 1051 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.24	23	6.7	0.2	2	23	624	646	623	646	0.96
2	12	0.00039	0.038	15.4	1.6	2	23	651	672	650	672	0.97
3	12	0.28	28	6.4	1.6	2	23	676	697	675	697	0.95
4	12	1.3	1.2e+02	4.4	0.6	1	23	702	725	702	725	0.92
5	12	0.14	14	7.4	0.0	2	23	783	805	782	805	0.94
6	12	0.023	2.3	9.8	2.7	2	20	812	830	811	832	0.93
7	12	0.0013	0.12	13.8	2.4	1	21	841	861	841	862	0.93
8	12	0.48	47	5.7	2.1	1	23	870	893	870	893	0.92
9	12	0.00033	0.032	15.6	0.6	2	23	931	952	930	952	0.96
10	12	0.11	11	7.7	0.2	2	23	979	999	979	999	0.94
11	12	5e-05	0.0049	18.2	2.0	2	23	1005	1026	1004	1026	0.92
12	12	0.31	31	6.3	0.6	3	23	1032	1051	1031	1051	0.95

Sequence Information

Coding Sequence: ATGCCTCATAAGTGCGCTGTTGTGGGTTGTGGTGCGTCTTATCACCAAAATTTGCCAAATCTGTCGTTTCACAGATTACCTAGAAATGAAGCAAGGAAAAGAATGTGGTTAGACATCattggaaataaaaatttaataaccaAATACAAACAGATAATTATTTGTTCCTTACATTTTGAGGAAAGCTCATTCAACAGAACACTTGGTGTTGTAAGATTGAGAGACGATGCAGTACCATCTTGCTCTACCATCAAtcagcaGTTGTCAACTCTTGCCAAATATCCAACTTTAACACCAATAGAACCAAATGAGCCTTCGAGCAGTCAACAGAATCCTATTTTGGAACCAGGCCTAAAAGAAAAGCAAGctctaaaagaaaaaattacTGGCCAGAAGAGAAAAATTAAATGTCTTAATGAAACCGTCCGTAGGCAGAAAATTAAAATAGCGAGTTCTAAGGCAACCATTAAGGAGTTtaaggaaaaatataaattagatATGCAGGCACCGTTGCACCTATTCCCGAATCCTGTAAAAGACCTACAAAGGTTGAACACGTGGGTTAATTGTATCAAAGGTGACATTATTGGGATGGAGGTTAATGATATACATAAACATCGCCGTGTATGTCATGCCCATTTTGAAGAAAAGTTTATTTACCACTCGTGTAGATTGAGTAATAACGCTGTTCCTACAATGTACTTGCCAGACCCACTATCCTTGCCCAAATTTACCTATGTTGAAAGAAGACCACGAAGAAAAGAGCAGTACACACCACAATGTTCTCTGGTAACCTCTGAAGATCCATTTTGTGTGTTTGCAGAGCTACCAAAGATTGCATCACAACCTACTGTTACTATAAATGTAGCGGCGACTATAGAGGGtaGTACATTGGATAAAACGTCAGAAGAGAGTACATCAGCTCCGTCACCCACAGAACTTGGAGGCTGTGATATTGATGACCCACCAGAAGTAAATAGTCCAGAAGACATTCGCCATTCACACTTAGACACACCAGCTGTTATTGAATTGCCAAAAGAGTGTGCTAAAGAGTCTGATGTAGCTGAGACGGTCAGCAAAGAGCCCGAGACCGTTAAAACATATGGCTCAAAAGCTGACAAACCTCGACCTGTGAAGCAAGTATTACAGTTGCGTTTATTAAACGACGAAGGTGTTTGTGATGAACCAATATATGAAGTTCTGACAGATGAGGAACCCGACAAGGACGTGGACAAGAAACAAACAGCGACACAGACTGACGtaCAAAATACGCCTTTAAGAGTAAATGATCCGCCGAGCGAGGAGAGCGAAGTTCAATCTGCGCCAATAGATGCACCAGCCGAGTCAACAACTCCGACATGTGACAAGTACACCAACAAGGAATACTGGAAGTTGAAGCTGAAGCACATATTCCACAACACGCAGTTCTGTGGAGTCTGTTTGGAGGCTGACGTCGACATGACCGCGCTCTCCCATGTGTTTGAGATCACTGATGATGAAAGAACTTGGAGCACATCTCTCGCAGACATTGTACATAAGGTCTTCAGAGAGgGTGAATATTGGCCGGCTAACTCACAAATATGCAACAATTGTACCAAGAAACTAATCCAgtcgtatatatttatacgcAATGCTGAAGAGACATCGAGAATGCTGGAGCGTCACTTAGATGAGTTGTACAATAAAACTTGTTACGTGCGTAACAAATCTCTGAAAGATGCCAACAGTGCACAACCAAAGATATACAATGTTGTTATTGCATTAGACAATAAAGTGATTTCACAGGACTTTGAAAGTAacgaaattaaaatagaaacacCGGAACCAGTGCAAAGCGAAAGAGGTCAGATTGGTGACAAAAGGAAACTGAGGTGTGTGAGTTGTAATGTGGTTGTACGGTCGTACAGAGCTTGGAGGAGGCACGAGAGAACAGCTCACAAACAGAGTGTCAGATGTAGAATATGTCTCCAGAGCTACAAGACACAGCGGGCCTTGACTACACATTACAGGACGCATTTGAGGTCGCGCTGTCCGTTTTGTCACAGAACTGTGCGAGATGGTGCACTGTTGCAACATTTGAAGACGCGCCACAAACACTCGATACACTCGTGTACGACGTGTAATGTCGCTCTCTACTCCGCCGAGGCTCTAGGGACTCATATAGAGGAGTGTCATCGTAGAGAGGGTTCTAAATGTGTGACGTGTCTGCAGAGTTTGTCGCGAGTCGAGTTGGAGCGGCACCAGTGCAGGTTCAAGTGTCCGGAGTGTGAGGAGTTGCCTTGTGTCCATCACCGGCACCTGATGTGGTACAGAGAGCAGATGGACCTGGACCCTGGACCCAGGGTCAAGTGTGCGGACTGTCGCTACGTGGCGTCCAGCAAGCAGGCGCTGTTAGCCCACGTCAACGCAACACATCTCAGTCAACAGTCTCTCCGCTGTGGCAGATGTGGACAACACTTCTATCGGCGAGCTCATTTAGATAAACATGTTTGTGCTTCTGGGAGAGGCAACAAACACTTCCACGAGTGTCGATATTGTGACAAGGCATTTAGCAATTTATACATGTGGAAACGACACGAGAAACACTGTGGGGGTATTCAAAGGAAGTATCAATGCGACGATTGTCCAGCTAATTTTGATTCAACAAAAGATCACCTGAAACATAGAAAACTCAAGCACGGTAAAGATTTCCTCTCGTGCAGGTTGTGTGACAGAGTCTTTCTAAACGATCTGAAGAGGACGAGTCACGAACGGCAAGCCCACGGCGAACAGAGAAGAAGAGCGAACTTAGTTTGTGCGTCGTGTCACACTGAGTTCTCCTCGAAGGCGGCCTTGGAACTGCACATGAGATACCATGGAGCTGAAGCAATGGGTCAGATCGACAATTTGGGGCAGTTGAAGAGTCACAAACACAGACGTAGACGTTCGTTTGCGGTGTGCGAAGTTTGTGGCGCAGTGATGAGGCGGACTCTGTTGAAGAAACACATGAAAGGCCATTCTATGGCGACAGTGTCGTGTAAAACGTGCGGCAAATCCTTCCAGAGCGCGACTTTACTGAGACATCATCAGAGTGTTCACGCGAGGACTGCGCCGTGTCCTAGATGTAAGAAAATGATAAGTTCTGCAAAGTTATGGCGACACTTCAGGAATCACCTCATTCGAGACTCTCTTAATGTTAAAGTTGCTGCAATACATGCTCTATGA
Protein Sequence: MPHKCAVVGCGASYHQNLPNLSFHRLPRNEARKRMWLDIIGNKNLITKYKQIIICSLHFEESSFNRTLGVVRLRDDAVPSCSTINQQLSTLAKYPTLTPIEPNEPSSSQQNPILEPGLKEKQALKEKITGQKRKIKCLNETVRRQKIKIASSKATIKEFKEKYKLDMQAPLHLFPNPVKDLQRLNTWVNCIKGDIIGMEVNDIHKHRRVCHAHFEEKFIYHSCRLSNNAVPTMYLPDPLSLPKFTYVERRPRRKEQYTPQCSLVTSEDPFCVFAELPKIASQPTVTINVAATIEGSTLDKTSEESTSAPSPTELGGCDIDDPPEVNSPEDIRHSHLDTPAVIELPKECAKESDVAETVSKEPETVKTYGSKADKPRPVKQVLQLRLLNDEGVCDEPIYEVLTDEEPDKDVDKKQTATQTDVQNTPLRVNDPPSEESEVQSAPIDAPAESTTPTCDKYTNKEYWKLKLKHIFHNTQFCGVCLEADVDMTALSHVFEITDDERTWSTSLADIVHKVFREGEYWPANSQICNNCTKKLIQSYIFIRNAEETSRMLERHLDELYNKTCYVRNKSLKDANSAQPKIYNVVIALDNKVISQDFESNEIKIETPEPVQSERGQIGDKRKLRCVSCNVVVRSYRAWRRHERTAHKQSVRCRICLQSYKTQRALTTHYRTHLRSRCPFCHRTVRDGALLQHLKTRHKHSIHSCTTCNVALYSAEALGTHIEECHRREGSKCVTCLQSLSRVELERHQCRFKCPECEELPCVHHRHLMWYREQMDLDPGPRVKCADCRYVASSKQALLAHVNATHLSQQSLRCGRCGQHFYRRAHLDKHVCASGRGNKHFHECRYCDKAFSNLYMWKRHEKHCGGIQRKYQCDDCPANFDSTKDHLKHRKLKHGKDFLSCRLCDRVFLNDLKRTSHERQAHGEQRRRANLVCASCHTEFSSKAALELHMRYHGAEAMGQIDNLGQLKSHKHRRRRSFAVCEVCGAVMRRTLLKKHMKGHSMATVSCKTCGKSFQSATLLRHHQSVHARTAPCPRCKKMISSAKLWRHFRNHLIRDSLNVKVAAIHAL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00442040;
90% Identity: iTF_01360679;
80% Identity: iTF_01360679;