Slub029813.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992300.1:11845195-11851489[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.2 20 6.9 0.2 2 23 501 523 500 523 0.96 2 12 0.00033 0.032 15.6 1.6 2 23 528 549 527 549 0.97 3 12 0.24 24 6.6 1.6 2 23 553 574 552 574 0.95 4 12 1.1 1.1e+02 4.6 0.6 1 23 579 602 579 602 0.92 5 12 0.8 78 5.0 0.1 2 23 660 682 660 682 0.93 6 12 0.0055 0.54 11.8 2.6 1 21 704 724 704 725 0.93 7 12 1.4 1.3e+02 4.3 0.3 1 12 733 744 733 750 0.85 8 12 3.6 3.6e+02 2.9 0.3 2 16 758 772 757 780 0.69 9 12 0.00041 0.04 15.3 0.6 3 23 791 811 789 811 0.95 10 12 0.23 23 6.7 0.1 2 23 838 858 838 858 0.94 11 12 3.9e-05 0.0038 18.5 2.7 2 23 864 885 863 885 0.87 12 12 0.39 39 6.0 0.5 3 23 891 910 890 910 0.92
Sequence Information
- Coding Sequence
- ATGGTTGGTTGTTCTATTCGGAATTGTAAGAGCAGAAGTATAAAAGGCGGgacaataagatttttttccttTCCCAAAAAAGAATCTGTAGCCAACGAATGGCTGCGCTATTGTCGCCCTAAAACAACTACTAGAAATGGGAGAGTATGTTCAAAACATTTTCTATCTTCTGATTATTTTAAGTCGCTGCGGCACATTCTCTTAAATGAAACACCCAAAACAGCAAGAGTATTACATCCAGATGCATTACCTACATTACTGATTGATGATATCATAGACAATCCAAATACGCTTAGTACGCCGATGGAAGTAAACAACCCAATTGTAGAGACTTCagataatatgaaatttaatcCTCAATGTACTAAAACACCAGCTGATGAGGTTTCGGGATCATCAAAGATTGAAGAAAAAAGGTGTGACATAAGGGCAAAATATTGCATACCGGATGGGGAATGGTTCACAAAAGAATGGTATCAAAAACTCTATAGCCAGAATAAAGTGTTATGCAACAGGTATTTTAAGAGCACTTCCTCTATGGATTACCCCGAGACTCCAACTAAGCTACATCAGGTAGCTGTTCCATTTGAAGATAGTGATAAGGGATCACAGGAGAAAACAGgcacACCTGCAATTGAATTGCCCAGAGAGGGTGCTAAACAGTCTGATGCAGCCGAGGCTGTCAGCGAAGCTGATGAGCTTGAAGTGACAAAGTCCGTGCCTAATGAAACACATAGCACACCAGCAGACAAACCTCGACCTCTGAAGCAAGTACTTCAGTTGCGCTTAATAGATGACGAAGGTGTTTGTGATGAACCAATATATGAAGTTCTGACAGATGATGAAAACGACAAGGACGTGGACAAGAAACAAACAGCGACACAGACGCACGtacaaaataCGTCTTCAAGTGTAAATGATCCGCCGAGCAAGGAGAGCTATGTTCAATCTGCGCCAATAACTACACCAGCCGAGTCAACAACCCCGACATGTGACAAGTACACCAACAAGGAATACTGGAAGTTGAAGCTGAAGCACATCCTCCACAACACGCAGTTCTGTGGAGTCTGTTTGGAGGCTGACGTCGACATGAAGGCGCTCTCCCATGTGTTTGAGATCACTGATGATGAAAGAAGTTGGAGCACATCTCTCGCAGACGTTGTACATAAGGTTTTCAGAGAGgGTGGGTATTGGCCGGCTAACTCACAAATATGCAAGAATTGTGCCAAGAAACTAATTcagtcttatatatttatatgcaacGCTAAAGAGACATCGAGAATGCTGGAGCGTCACTTAGATGAGTTGTATACTAAAACTTGCTACGTGCGTAAAAAATCTCTGAAAGATGCCAATAGCTCACAACCAAAGATATACAATGTTGTTATTGCATTAGACAATAAAGTGATTTCACAGGACTTTGaaagtaatgaaattaaaatagaaacacCGGAACCAGTGCAAAGCGAAAGAGGTCAGATTGGTGACAAAAGGAAACTGAGGTGTGTGAGTTGTAATGTGGTTGTACGGTCGTACAGAGCTTGGAGGAGGCACGAGAGAACAGCTCACAAACAGAGTGTCAGATGTAGAATATGTCTCCAGAGCTACAAGACACAGCGGGCCTTGACTACACATTACAGGACGCATTTGAGGTCGCGCTGTCCGTTTTGTCACAGAACTGTGCGAGATGGTGCACTGTTGCAACATTTGAAGACGCGCCACAAACACTCGATACACTCGTGTACGACGTGTAATGTCGCTCTCTACTCCGCCGAGGCTCTAGGGACTCATATAGAGGAGTGTCATCGTAGAGAGGGTTCTAAATGTGTGACGTGTCTGCAGAGTTTGTCGCGAGTCGAGTTGGAGCGGCACCAGTGCAGGTTCAAGTGTCCGGAGTGTGAGGAGTTGCCTTGTGTCCATCACCGGCACCTGATGTGGTACAGAGAGCAGATGGACCTGGACCCTGGACCCAGGGCCAAGTGTGCGGACTGTCGCTACGTGGCGTCCAGCAAACGGGCGATGTTAGCGCATGTCAACGCAACACATCTCAGTGGACATCGCCTCTGTCGGTCAGATCTGACTGCATCTGACAAGGACAAGAGACACCTCCACGAGTGCCGATTTTGTGACAAGGCATTTAGCAATTTGTACATGTGGAAACGACACGAGAAACACTGTGGGGGTATTCAAAGGAAGTATCAATGCGACGATTGTCCAGCTAACTTTGATTCGACAAAAGATCACATGAAACAGAACGATAAAGAGTTCCTCTCGTGCAGTTTGTGTGACAGAGTGTTTCTAAACGACCTCAAGAGGACTAGACACGAACGGCAAGCCCACGGCGAACACCGAGGAAGGGCGAGCTTAATCTGTGCATCGTGTCACACTGAGTTCTCCTCGAAGGCGGCCTTGGAACTGCACATGAGATACCATGGAGCTGAAACAAGGGGTCAGCTCGATAGTATGGAACAGTTCAAGAGTCACAAAAACAGACGCAGACGTTCGTTTGCGGTGTGCGAAGTTTGTGGCGTAGTGATGAGGCGGATTCTGTTGAAGAAACACATGAAAGGCCATTCTATGGCGACAGTGTCGTGTAAAACGTGCGGCAAATCCTTCCAGAGCTCGACTTTACTGAGACATCATCAGAGTGTTCACGCGAAGATTGCGCCGTGTCCTAGATGTAAGAAATTGATCAGTTCTGCAAATTTATGGCGACATTTCAGGAATCACCTCATTCGAAATTCCCTTGATGTCAAAGATGCTGTAATACAATAA
- Protein Sequence
- MVGCSIRNCKSRSIKGGTIRFFSFPKKESVANEWLRYCRPKTTTRNGRVCSKHFLSSDYFKSLRHILLNETPKTARVLHPDALPTLLIDDIIDNPNTLSTPMEVNNPIVETSDNMKFNPQCTKTPADEVSGSSKIEEKRCDIRAKYCIPDGEWFTKEWYQKLYSQNKVLCNRYFKSTSSMDYPETPTKLHQVAVPFEDSDKGSQEKTGTPAIELPREGAKQSDAAEAVSEADELEVTKSVPNETHSTPADKPRPLKQVLQLRLIDDEGVCDEPIYEVLTDDENDKDVDKKQTATQTHVQNTSSSVNDPPSKESYVQSAPITTPAESTTPTCDKYTNKEYWKLKLKHILHNTQFCGVCLEADVDMKALSHVFEITDDERSWSTSLADVVHKVFREGGYWPANSQICKNCAKKLIQSYIFICNAKETSRMLERHLDELYTKTCYVRKKSLKDANSSQPKIYNVVIALDNKVISQDFESNEIKIETPEPVQSERGQIGDKRKLRCVSCNVVVRSYRAWRRHERTAHKQSVRCRICLQSYKTQRALTTHYRTHLRSRCPFCHRTVRDGALLQHLKTRHKHSIHSCTTCNVALYSAEALGTHIEECHRREGSKCVTCLQSLSRVELERHQCRFKCPECEELPCVHHRHLMWYREQMDLDPGPRAKCADCRYVASSKRAMLAHVNATHLSGHRLCRSDLTASDKDKRHLHECRFCDKAFSNLYMWKRHEKHCGGIQRKYQCDDCPANFDSTKDHMKQNDKEFLSCSLCDRVFLNDLKRTRHERQAHGEHRGRASLICASCHTEFSSKAALELHMRYHGAETRGQLDSMEQFKSHKNRRRRSFAVCEVCGVVMRRILLKKHMKGHSMATVSCKTCGKSFQSSTLLRHHQSVHAKIAPCPRCKKLISSANLWRHFRNHLIRNSLDVKDAVIQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442040;
- 90% Identity
- iTF_01360716;
- 80% Identity
- iTF_01360716;