Camp019737.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia amplana
Gene Symbol
Hr39
Assembly
GCA_948474715.1
Location
OX419654.1:35108692-35124354[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 3.2 2e+04 -5.0 9.1 39 167 138 295 119 342 0.47
2 4 5.6e-08 0.00035 20.6 0.1 1 21 423 443 423 450 0.91
3 4 0.03 1.9e+02 1.7 0.0 77 117 468 505 447 517 0.80
4 4 7.9e-65 5e-61 207.8 0.0 165 408 485 740 472 740 0.85

Sequence Information

Coding Sequence
ATGGCGACTGAGGGGGAGGCGGTTAAAGTGGAGGGGGGGCATGTGTCTGTGACGACGATCAGTATGTCCGGGCCGGAAACGAGTAATGGTCAATTCTCGTATAGCTCGAGCGGGGTGCGAATCAGCGTATCCTCGGACCCCCACGATGAGGACTCTACAGACGCTGAGATATCGAAGATCGACTTCTCGCAACACCAGTACGAGGTAAACATGCGTAACAAGAAGAAGCGGTCGTCCAGCGGACATGAGCCAGGGGACACGGAGAGGCCCATGTCCTGGGAAGGAGAGCTGTCTGACTCCGAAATGGTCATAGACACCAGCGTCAACATGAACGACCCATGCAGCTCACCGGACCTACAATCGTCTCGGGACTCCATAGACACCCTCCGCAACGTCACCATAAAGCAGGAGCCTCTCAAAACGGAGCAGTTTCAAAGCCTGGACGACCAACGCGTTCTGGACCTCAAGTACACGCCCATACAGCCACATCAGAGGAGTCTTAGTATGAACCGGATATCGGTGGTCACGGAAAGCGCCCCGCTGCGTCGCCCTTCGTCCCCCGTAGCCAAGATGGAGGCCCAGCTGATGCCGCAGCCTCCAGGGGAGATACAGAACCTCACCATCAAGAAGGAGAGTCGAGAGTTGTCAGAGCTAAAATGCGAGCCGTCAGTGGGCATGGACAAGTTGCTGGGCGCTCTCCACGGCTCCCCACTGCTGGGCAGACTGCCGCGGGTCCAGTCCAGCGCCAGCACGGACTCCGCCGTCCATTCCATGTACACACACAGTGTCTACAGCAGCCCGTCGGCCAGTCCGCGAGCGTCGCGGCACTACACCCCGTCTCTTTCTCGCAACAACAGCGACGCATCGCACTCTTCCTGTTACTCTTACAGCTCGGAGTTCTCACCCACACACTCACCTGTCCAGAGTCGGCATCCGCACGTCCTCTACCGAGAACAGAATCCCGTGTTCCCCGCGTCGCCGGCCGACGACGAGGATACAGGCGAAGACCGTCTACACCACCACCAGGGCATCAGTAGGCAGCAGCTCATTAACAGCCCCTGCCCCATATGCGGCGACAAAATCAGCGGTTTCCACTACGGCATATTCTCCTGCGAGTCCTGCAAAGGCTTTTTCAAGCGGACCGTCCAAAACAGAAAGAACTACATGTGTCTGCGCGGCGGCAGCTGTCCGGTCACCGTGGCCACGAGGAAAAAGTGCCCCGCGTGTCGATTCGACAAGTGCCTCGGCACTGGGATGAAGCTGGAAGCCATAAGAGAAGATCGAACACGAGGCGGCCGCTCGACGTACCAATGCTCATACACACTATCAGGAGCAGTGTCGACCGGGTCTCTACTATCCGCACCCGTCCCTCCTACACTACGCCACGCCTCGAGCCTCACTTGCGTCAACGGCCCCGGGTCGTACAGTCGAGGGGAGTCCAGCAACAGCCGGCTCACACCAGACATTCCCCCGTTATTGCAGGAAATAATGGATGTGGAGCATCTCTGGCAATACAACGAGTCGGAGCTGAACCGCCTGGGCAAGTCTACGGGTAGCCCCTCGGCTAACCCCCTACTAGCCGCGTCAGGGATCACGGCCCAGAACTCGAGCCCCGACTTCCTGGCAGACTTGTGCAACATAGCCGACCACAGGCTGTACAAGATCGTCAAGTGGTGCAAGAGCCTGCCGCTGTTTAAGAATATTTCGATCGACGACCAGATCTGCTTGCTGATCAACAGTTGGTGCGAGCTGCTAGTACTGTCTTGCTGCTATCGCGGCGTGGGGACCCCGGGGGAAGTGCGGGTAGGGGGAGGGAGGGGCATCACGCTACACCAGGCTGCCAAATTGGGTCTGACTCCGTGCATAGAGCGTATGCTGAGCTTCACGGACCACCTGCGGCGGTTAAGGGTCGATAGGTACGAGTATGTGGCCCTCAAGGTCATCGTGTTACTCACTTCAGATGCCCCAGAGCTAAGAGAAGCGGAGAAAGTCCGCGCTTCGCAAGAGAAGGCGCTGGGTGCGCTCCAGGCGTACACAGCATCCCATTCGCCCGACACGCCAGCCAAGTTCGGAGAGCTGTTGCTGCGTATACCGGAGCTGCAGCGCACCTGCCAGTTCTTCATGCAAGTCGGCAAAGAAATGTTGAACCCGGCAAACAAAAGCAAAGATGGCGATGGTCCCAGCTTCAACCTGCTGATGGAGCTGCTGAGGGGAGACCACTGA
Protein Sequence
MATEGEAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSDPHDEDSTDAEISKIDFSQHQYEVNMRNKKKRSSSGHEPGDTERPMSWEGELSDSEMVIDTSVNMNDPCSSPDLQSSRDSIDTLRNVTIKQEPLKTEQFQSLDDQRVLDLKYTPIQPHQRSLSMNRISVVTESAPLRRPSSPVAKMEAQLMPQPPGEIQNLTIKKESRELSELKCEPSVGMDKLLGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQSRHPHVLYREQNPVFPASPADDEDTGEDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGSCPVTVATRKKCPACRFDKCLGTGMKLEAIREDRTRGGRSTYQCSYTLSGAVSTGSLLSAPVPPTLRHASSLTCVNGPGSYSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELNRLGKSTGSPSANPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVGTPGEVRVGGGRGITLHQAAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALGALQAYTASHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKSKDGDGPSFNLLMELLRGDH