Basic Information

Insect: Tortricodes alternella
Gene Symbol: Hr39
Assembly: GCA_947859335.1
Location: OX401970.1:29423446-29442086[-]

Transcription Factor Domain

TF Family: SF-like
Domain: zf-C4|SF-like
PFAM: AnimalTFDB
TF Group: Zinc-Coordinating Group
Description: The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.21 1.6e+03 -1.5 5.7 76 163 174 271 109 322 0.46

2 3 4.1e-08 0.0003 20.6 0.1 1 21 403 423 403 430 0.91

3 3 1.3e-65 9.6e-62 210.0 0.0 153 408 457 721 434 721 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.21	1.6e+03	-1.5	5.7	76	163	174	271	109	322	0.46
2	3	4.1e-08	0.0003	20.6	0.1	1	21	403	423	403	430	0.91
3	3	1.3e-65	9.6e-62	210.0	0.0	153	408	457	721	434	721	0.85

Sequence Information

Coding Sequence: ATGCAGACTGGTTTTCTGTTAACAGGTCAGTTCTCGTATAGTTCGAGTGGGGTCCGAATCAGCGTATCCTCGGATCCTCATGACGAAGATTCTACGGACGCCGAAATATCCAAGATAGACTTCACACAACACCAATATGAGGTAAACATGCGTAACAAGAAGAAGCGATCGTCGAGCGGGCAAGAGGCGGGCGATACGGAACGACCTATGTCATGGGAAGGCGAACTGTCAGACTCGGAAATGGTTATAGACACCAGTGTCAATATGCATGATCCGGGCAGTTCCCCAGACCTGCAGTCATCGCGCGACTCCATCGACACACTGCGGAATGTCACAATAAAAACGGAGCCGTTGAAGACCGACGCCTTTCAGAGTCTGGATGACCAGCGAGTCCTGGATCTGAAGTATACACCACTGCAACCGCATCAGAGAAGCCTTAGCATGAATAGGATATCAGTGTTAACGGAAAGTACAGCGCACCGGCGACCTTGTTCTCCGACGGCGAAGCTTGACCAGACCATGCAGCTGATGCCGCAGCCTTCGGGAGAAATACAGAACCTCACTATTAAGAAAGAGACGCAGTCGGAGCTAAAATGCGAGCCTTCGGTGGGCATGGACAAGCTGCTGGGCGCTCTCCACGGCTCCCCACTGTTGGGACGGCTGCCACGGGTCCAATCCAGCGCCAGCACCGACTCAGCCGTGCACTCCATGTATACGCACAGCGTCTACAGCAGTCCTTCGGCCAGCCCGCGCGCCTCTCGCCACTACACGCCGTCTCTTTCTCGCAACAACAGCGACGCATCACACTCTTCCTGTTACTCCTATAGCTCGGAATTTTCACCCACACACTCACCCGTTCAGGGCCGACATCCTCACGTGATGTACAGAGATCAAACTAACCCTGTGTTCCCGACATCACCCGCGGAGGACGATGACACGACTGAAGACAGGCTGCACCACCACCAGGGCATCAGCAGGCAACAGCTGATCAACAGCCCCTGCCCGATTTGCGGGGACAAAATCAGCGGTTTCCACTACGGCATATTCTCCTGCGAGTCCTGCAAGGGATTTTTCAAACGCACCGTGCAGAACCGGAAGAACTACATGTGCCTCCGGGGCGGTAACTGTCCGGTCACCGTCGCCACCCGGAAGAAGTGCCCCGCCTGTAGATTTGACAAGTGCCTCGGGTGCGGGATGAAGCTTGAAGCGATAAGGGAAGACCGGACGCGCGGCGGGCGCTCCACGTACCAGTGCTCATACACGCTGTCGGGCGCCGTCTCAACCGGCTCGTTGCTGTCCGCCCACGTGCCTACCACGCTCCGGCACGCGTCGAGCCTGACTTGCGTAAATGGTCCTGCCTCGTACAACAGTAGAGGGGAGTCGAGCAACAGTCGCCTGACGCCAGATATACCCCCATTATTGCAAGAAATAATGGACGTGGAACATCTGTGGCAGTACAATGAGTCCGAACTGAACCGGTTAGGCAAGGCCCCGGGCAATCCGTCAGGCAACCCACTCCTCGCTGCCAGCGGCATCACTGCGCAGAACTCGAGCCCTGACTTCCTCGCGGACCTGTGCAATATAGCCGACCACAGACTGTACAAGATCGTCAAGTGGTGCAAGAGTTTGCCGCTGTTCAAGAATATCTCGATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGCGAGCTGCTGGTGCTGTCGTGCTGCTACCGCGGCGTGAGCACGCCGGGGGAGGTGCGCGTCGGCGGCGGCCGCGGGATCACGCTGCACCAGAGCGCCAAGCTGGGTCTGACTCCGTGTATAGAACGTATGCTGAGTTTCACCGACCACCTCAGAAGGCTTCGGGTCGACAGATACGAGTACGTCGCGCTAAAAGTCATCGTTCTCCTTACTTCCGACGCTCCGGAGCTCCGCGAGGCTGAGAAAGTTCGGGCGTCCCAAGAGAAAGCCTTGGCAGCCCTGCAGGCCTACACGGCGGCGCACTCGCCCGACACTCCGGCGAAGTTCGGAGAGCTGCTCCTGCGCATACCGGAACTGCAGCGGACCTGCCAGTTTTTCATGCAAGTCGGCAAAGAAATGCTGAATCCGGCCAACAAAAATAAAGATGGCGATGGGCCGAGCTTCAATCTACTCATGGAGTTACTAAGGGGCGACCACTGA
Protein Sequence: MQTGFLLTGQFSYSSSGVRISVSSDPHDEDSTDAEISKIDFTQHQYEVNMRNKKKRSSSGQEAGDTERPMSWEGELSDSEMVIDTSVNMHDPGSSPDLQSSRDSIDTLRNVTIKTEPLKTDAFQSLDDQRVLDLKYTPLQPHQRSLSMNRISVLTESTAHRRPCSPTAKLDQTMQLMPQPSGEIQNLTIKKETQSELKCEPSVGMDKLLGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVMYRDQTNPVFPTSPAEDDDTTEDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYTLSGAVSTGSLLSAHVPTTLRHASSLTCVNGPASYNSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELNRLGKAPGNPSGNPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTAAHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKNKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386822;
90% Identity: iTF_00409344;
80% Identity: iTF_01463393;