Cpom002635.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia pomonella
Gene Symbol
Hr39
Assembly
GCA_033807575.1
Location
CM066344.1:43748394-43769241[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.13 1.5e+03 -0.4 4.5 34 163 133 292 118 334 0.58
2 4 5.6e-08 0.00061 20.6 0.1 1 21 424 444 424 451 0.91
3 4 0.03 3.4e+02 1.7 0.0 77 117 469 506 448 518 0.80
4 4 5.7e-65 6.3e-61 208.3 0.0 165 408 486 741 473 741 0.85

Sequence Information

Coding Sequence
ATGGCAACTGAGGGGGAGGCGGTTAAAGTGGAGGGGGGGCATGTGTCTGTGACGACGATCAGCATGTCCGGGCCCGAGACGAGCAatgGTCAATTCTCGTACAGTTCGAGCGGAGTACGGATTAGCGTTTCCTCGGACCCCCACGACGAGGACTCGACGGACGCTGAGATATCGAAGATCGACTTCTCACAACACCAGTACGAGGTAAACATGCGTAATAAGAAAAAGCGGTCGTCCAGCGGGCATGAGCCAGGGGACACAGAGAGGCCCATGTCCTGGGAGGGagaactgtccgactccgaaaTGGTCATAGACACCAGCGTGAACATGAATGACCCATGCAGCTCACCGGACCTACAGTCGTCTCGGGACTCCATAGACACGCTTCGCAACGTCACCATAAAGCAGGAGCCTCTAAAAACGGAGCAGTTCCAAAGCCTGGACGATCAACGTGTGCTGGACCTCAAGTACACGCCGATACAGCCACATCAGAGGAGTCTTAGTATGAACCGGATATCGGTAGTAACGGAAAGCGCCCCGCTGCGTCGCCCTTCGTCTCCAGCAGCCAAAATGGAGGCCCAGGCCATGCCGCAACCTCCAGGGGAGATACAGAACCTCACCATCAAGAAGGAGAGTCGAGAGTTGTCTGaGCTAAAATGCGAGCCTTCAGTGGGCATGGACAAGTTGCTGGGCGCACTCCACGGCTCCCCTCTGCTGGGCAGACTGCCACGAGTCCAGTCCAGCGCCAGCACGGATTCCGCCGTCCATTCCATGTACACACACAGTGTCTACAGCAGCCCATCGGCCAGCCCGCGCGCGTCGCGGCACTACACTCCGTCTCTCTCTCGCAACAACAGCGATGCATCGCACTCTTCCTGTTACTCTTACAGCTCGGAGTTCTCACCCACACATTCACCTGTCCAGGGTCGCCATCCGCACGTCCTCTACCGGGAACAGAACCCCGTGTTCCCCGCGTCGCCGGCCGACGACGAGGACACTGGAGAAGACCACCGTTTACACCACCACCAGGGCATCAGCAGGCAACAGCTCATTAACAGCCCCTGCCCCATATGCGGCGACAAAATCAGCGGTTTCCACTACGGCATCTTCTCCTGTGAGTCCTGCAAAGGTTTCTTCAAGCGGACCGTTCAAAACAGAAAGAACTATATGTGTCTACGCGGCGGCAGTTGTCCTGTCACCGTGGCGACTAGGAAGAAGTGCCCGGCGTGTAGATTCGACAAGTGCCTTGGCACTGGGATGAAGCTGGAAGCCATACGAGAAGATCGAACACGAGGCGGGCGCTCCACGTACCAATGCTCGTACACATTATCGGGAGCAGTATCGACCGGGTCTCTACTATCCGCACCCGTGCCTCCTACGCTACGCCACGCATCAAGCCTCACTTGCGTGAACGGCCCCGGGTCGTACAGTCGAGGGGAGTCCAGCAACAGCCGACTCACGCCAGACATTCCCCcgttattgcagGAAATAATGGATGTGGAGCATCTCTGGCAATATAACGAGTCGGAGCTGAACCGCCTGGGCAAGTCCACGGGCAGCCCCTCGGCCAACCCCTTACTTGCAGCCTCAGGAATTACGGCCCAGAACTCTAGCCCAGACTTTCTGGCAGACCTGTGCAATATAGCTGATCACAGACTGTACAAGATTGTCAAGTGGTGCAAGAGCTTGCCGCTATTTAAGAATATTTCGATCGACGATCAGATCTGCTTGCTGATCAACAGTTGGTGCGAATTACTAGTTCTGTCCTGCTGCTACCGCGGCGTGGGGACCCCAGGGGAAGTGCGGGTGGGGGGAGGGAGGGGCATCACGCTACACCAGGCTGCCAAATTGGGTCTGACTCCGTGCATAGAGCGCATGCTGAGCTTCACGGACCACCTGCGGCGGTTGAGGGTCGACAGGTACGAGTACGTGGCGCTCAAGGTCATCGTGTTGCTCACTTCAGACGCCCCAGAGCTGCGGGAAGCCGAGAAAGTCCGCGCCTCACAAGAGAAGGCGTTAGGTGCGCTCCAGGCGTACACCGCAGCACATTCACCAGACACGCCCGCCAAGTTCGGCGAGCTGCTGCTGCGCATACCGGAGCTGCAGCGCACCTGCCAGTTCTTCATGCAAGTCGGCAAAGAAATGTTAAACCCGGCAAATAAAAGCAAAGACGGCGACGGTCCCAGCTTCAACCTGCTGATGGAGCTGCTGCGGGGAGACCACTGA
Protein Sequence
MATEGEAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSDPHDEDSTDAEISKIDFSQHQYEVNMRNKKKRSSSGHEPGDTERPMSWEGELSDSEMVIDTSVNMNDPCSSPDLQSSRDSIDTLRNVTIKQEPLKTEQFQSLDDQRVLDLKYTPIQPHQRSLSMNRISVVTESAPLRRPSSPAAKMEAQAMPQPPGEIQNLTIKKESRELSELKCEPSVGMDKLLGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVLYREQNPVFPASPADDEDTGEDHRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGSCPVTVATRKKCPACRFDKCLGTGMKLEAIREDRTRGGRSTYQCSYTLSGAVSTGSLLSAPVPPTLRHASSLTCVNGPGSYSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELNRLGKSTGSPSANPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVGTPGEVRVGGGRGITLHQAAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALGALQAYTAAHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKSKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01386822;
90% Identity
iTF_00409344;
80% Identity
iTF_00411567;