Acra016582.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Archips crataeganus
Gene Symbol
Hr39
Assembly
GCA_947859365.1
Location
OX402045.1:44986927-45019848[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.9 2.7e+04 -5.2 9.5 65 163 184 293 118 344 0.53
2 3 4.3e-08 0.0004 20.5 0.1 1 21 426 446 426 452 0.91
3 3 2.2e-65 2.1e-61 209.2 0.0 157 408 484 744 456 744 0.84

Sequence Information

Coding Sequence
ATGGCGACGGAGGGCGAAGCGGTCAAGGTTGAAGGGGGCCACGTATCAGTAACCACTATCAGCATGTCAGGCCCTGAGACCAGCAACGGTCAGTTCTCGTACAGCTCGAGTGGGGTTCGAATCAGCGTGTCCTCGGACCCTCACGACGAGGACTCCACCGACGCTGAAATATCCAAGATTGACTTCACCCAAAACCAGTACGAGGTAAACATGCGGAACAAGAAGAAGCGGTCCTCAAGCGGTCACGAGCCCTGCGACACCGAGAGGCCAATGTCTTGGGAGGGCGAGTTGTCGGACTCCGAAATGGTCATAGACACCAGCGTGAATATGCATGACCCAAGCAGCTCCCCCGACTTGCAGTCATCGCGGGATTCCATAGACACCCTCCGCAATGTGACCATAAAGACAGAGCCGCTGAAGACTGAGGCCTTCCAGAGCTTGGATGACCAGCGGGTGCTGGACTTGAAGTACACGCCACTGCAGCCGCACCAGAGGAGTCTTAGCATGAACAGGATATCAGTGCTGACCGAAAGTCCTGCCCTGAGACGGCCATCGTCTCCGACGAGCAAGAACGATCAAACCATGCCTCTGATGCCACAGACCTCTGGTGAAATACAGAACTTGACCATCAAAAAGGAAACACAGTTGTCTGAGCTGAAGTGTGAGCCAACAGTGGGCATGGACAAGTTGCTGGGCGCTCTACACGGCTCGCCACTGTTCGGCAGGCTGCCACGGGTTCAATCCAGCGCCAGTACTGACTCCGCCGTACATTCCATGTACACGCACAGCGTCTATAGCAGCCCCTCGGCCAGTCCTCGCGCTTCGCGGCACTACACGCCGTCTCTTTCCCGCAACAACAGCGACGCATCGCACTCTTCCTGTTACTCATACAGCTCAGAGTTCTCTCCTACTCACTCGCCTGTTCAGGGTCGCCATCCGCACCTGATGTACCGAGAGCAGACGAACGCAGTTTTCCCAGCGTCACCCGCCCAGGAGGATGAAGACGTGACCGACGACAGACTCCATCACCATCAGGGGATTAGCAGACAGCAACTGATTAACAGCCCATGCCCTATATGCGGAGACAAGATCAGCGGTTTCCATTACGGCATCTTCTCCTGCGAATCCTGTAAAGGTTTCTTCAAGCGCACCGTCCAGAATAGGAAGAACTACATGTGTCTGCGAGGCGGCAACTGTCCGGTCACCGTGGCCACCCGGAAAAAGTGTCCGGCGTGCCGGTTCGACAAGTGTCTCGGCTGCGGGATGAAGCTTGAAGCGATAAGGGAAGACAGGACTCGCGGCGGCCGCTCCACATACCAGTGTTCGTACACGCTGTCAGGAGCGGTGTCGACAGGCTCGCTGCTGTCCGCACACGTGCCTACTACACTCCGGCACGCCTCCAGCCTCACTTGCGTCAATGGCCCCGGGTCATACAACAGTCGAGGCGAGTCCAGTAACAGCCGTTTAACACCAGATATACCCCCATTATTGCAGGAAATAATGGACGTGGAACATCTCTGGCAATACAACGAGTCCGAACTGAGCCGGCTGGGCAAGTCCACCGGCAGCCCGTCCACCAACCCGCTGCTCGCAGCCAGCGGCATCACCGCGCAGAACTCGAATCCCGACTTTTTGGCGGACCTCTGTAACATAGCGGACCATCGCCTGTACAAGATCGTCAAGTGGTGCAAGAGTCTGCCGCTGTTTAAGAACATTTCGATTGACGACCAGATCTGTCTGCTTATAAACAGCTGGTGCGAGCTTTTGGTGCTGTCGTGTTGCTACCGAGGGGTTGGGACCCCGGGGGAGGTGCGGGTCGGCGGGGGGAGAGGCATCACACTACACCAAAGCGCCAAGCTTGGGCTGACGCCTTGCATAGAGAGGATGCTGAGTTTCACCGAACACCTCCGAAGGCTCCGAGTGGACCGATACGAATACGTCGCATTGAAGGTCATCGTTTTATTGACCTCGGATGCGCCGGAGTTGCGGGAAGCGGAGAAAGTCCGCGCTTCCCAGGAGAAAGCGCTCGCGGCGCTGCAGGCGTACACAGCGACGCACTCGCCGGAAACGCCAGCCAAGTTCGGCGAGCTGCTACTGCGCATACCCGAACTGCAACGGACTTGCCAGTTTTTCATGCAAGTCGGCAAGGAAATGTTGAATCCCGCCAACAAGAACAAAGATGGCGACGGCCCGAGTTTCAATCTGCTGATGGAACTGCTCAGAGGGGACCACTGA
Protein Sequence
MATEGEAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSDPHDEDSTDAEISKIDFTQNQYEVNMRNKKKRSSSGHEPCDTERPMSWEGELSDSEMVIDTSVNMHDPSSSPDLQSSRDSIDTLRNVTIKTEPLKTEAFQSLDDQRVLDLKYTPLQPHQRSLSMNRISVLTESPALRRPSSPTSKNDQTMPLMPQTSGEIQNLTIKKETQLSELKCEPTVGMDKLLGALHGSPLFGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHLMYREQTNAVFPASPAQEDEDVTDDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYTLSGAVSTGSLLSAHVPTTLRHASSLTCVNGPGSYNSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELSRLGKSTGSPSTNPLLAASGITAQNSNPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVGTPGEVRVGGGRGITLHQSAKLGLTPCIERMLSFTEHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTATHSPETPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKNKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01386822;
90% Identity
iTF_00409344;
80% Identity
iTF_00155398;